vin858
commented
5 months ago Hi @drprojects , I also have the same issue when installing point geometric features in superpoint transformer.
Collecting git+https://github.com/drprojects/point_geometric_features.git Cloning https://github.com/drprojects/point_geometric_features.git to /tmp/pip-req-build-x05q6kos Running command git clone --filter=blob:none --quiet https://github.com/drprojects/point_geometric_features.git /tmp/pip-req-build-x05q6kos Resolved https://github.com/drprojects/point_geometric_features.git to commit 255bbc014f6e2b3d11d34dc149bdc5bd5ec3734f Running command git submodule update --init --recursive -q Installing build dependencies ... done Getting requirements to build wheel ... done Installing backend dependencies ... done Preparing metadata (pyproject.toml) ... done Requirement already satisfied: numpy<2,>=1.7 in /home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages (from pgeof==0.2.0) (1.22.4) Building wheels for collected packages: pgeof Building wheel for pgeof (pyproject.toml) ... error error: subprocess-exited-with-error
× Building wheel for pgeof (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [279 lines of output]
scikit-build-core 0.9.5 using CMake 3.29.3 (wheel)
Configuring CMake...
2024-06-02 10:12:37,196 - scikit_build_core - WARNING - Can't find a Python library, got libdir=/home/vaibhav/conda3v2/envs/superpoint/lib, ldlibrary=libpython3.8.a, multiarch=x86_64-linux-gnu, masd=None
loading initial cache file build/cp38-cp38-linux_x86_64/CMakeInit.txt
-- The C compiler identification is GNU 9.4.0
-- The CXX compiler identification is GNU 9.4.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Python: /home/vaibhav/conda3v2/envs/superpoint/bin/python3.8 (found suitable version "3.8.19", minimum required is "3.8") found components: Interpreter Development.Module
-- Configuring done (0.7s)
-- Generating done (0.0s)
-- Build files have been written to: /tmp/pip-req-build-x05q6kos/build/cp38-cp38-linux_x86_64
** Building project with Ninja...
[1/12] Building CXX object CMakeFiles/nanobind-static.dir/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/src/trampoline.cpp.o
[2/12] Building CXX object CMakeFiles/nanobind-static.dir/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/src/implicit.cpp.o
[3/12] Building CXX object CMakeFiles/nanobind-static.dir/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/src/nb_enum.cpp.o
[4/12] Building CXX object CMakeFiles/nanobind-static.dir/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/src/nb_internals.cpp.o
[5/12] Building CXX object CMakeFiles/nanobind-static.dir/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/src/error.cpp.o
[6/12] Building CXX object CMakeFiles/nanobind-static.dir/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/src/nb_ndarray.cpp.o
[7/12] Building CXX object CMakeFiles/nanobind-static.dir/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/src/common.cpp.o
[8/12] Building CXX object CMakeFiles/nanobind-static.dir/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/src/nb_func.cpp.o
[9/12] Building CXX object CMakeFiles/nanobind-static.dir/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/src/nb_type.cpp.o
[10/12] Linking CXX static library libnanobind-static.a
[11/12] Building CXX object CMakeFiles/pgeof_ext.dir/src/pgeof_ext.cpp.o
FAILED: CMakeFiles/pgeof_ext.dir/src/pgeof_ext.cpp.o
/usr/bin/c++ -Dpgeof_ext_EXPORTS -I/tmp/pip-req-build-x05q6kos/include -I/tmp/pip-req-build-x05q6kos/third_party/eigen -I/tmp/pip-req-build-x05q6kos/third_party/nanoflann/include -I/tmp/pip-req-build-x05q6kos/third_party/taskflow -I/home/vaibhav/conda3v2/envs/superpoint/include/python3.8 -I/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include -O3 -DNDEBUG -std=gnu++17 -flto -fno-fat-lto-objects -fPIC -fvisibility=hidden -fno-stack-protector -MD -MT CMakeFiles/pgeof_ext.dir/src/pgeof_ext.cpp.o -MF CMakeFiles/pgeof_ext.dir/src/pgeof_ext.cpp.o.d -o CMakeFiles/pgeof_ext.dir/src/pgeof_ext.cpp.o -c /tmp/pip-req-build-x05q6kos/src/pgeof_ext.cpp
In file included from /tmp/pip-req-build-x05q6kos/src/pgeof_ext.cpp:7:
/tmp/pip-req-build-x05q6kos/include/nn_search.hpp:32:55: error: ‘ndim’ is not a member of ‘nb’
32 | static std::pair<nb::ndarray<nb::numpy, uint32_t, nb::ndim<2>>, nb::ndarray<nb::numpy, real_t, nb::ndim<2>>>
| ^~~~
/tmp/pip-req-build-x05q6kos/include/nn_search.hpp:32:60: error: template argument 3 is invalid
32 | static std::pair<nb::ndarray<nb::numpy, uint32_t, nb::ndim<2>>, nb::ndarray<nb::numpy, real_t, nb::ndim<2>>>
| ^
/tmp/pip-req-build-x05q6kos/include/nn_search.hpp:32:61: error: wrong number of template arguments (1, should be 2)
32 | static std::pair<nb::ndarray<nb::numpy, uint32_t, nb::ndim<2>>, nb::ndarray<nb::numpy, real_t, nb::ndim<2>>>
| ^~
In file included from /usr/include/c++/9/bits/stl_algobase.h:64,
from /usr/include/c++/9/bits/char_traits.h:39,
from /usr/include/c++/9/string:40,
from /usr/include/c++/9/stdexcept:39,
from /home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/nanobind.h:31,
from /tmp/pip-req-build-x05q6kos/src/pgeof_ext.cpp:2:
/usr/include/c++/9/bits/stl_pair.h:208:12: note: provided for ‘template<class _T1, class _T2> struct std::pair’
208 | struct pair
| ^~~~
In file included from /tmp/pip-req-build-x05q6kos/src/pgeof_ext.cpp:7:
/tmp/pip-req-build-x05q6kos/include/nn_search.hpp:32:63: error: expected unqualified-id before ‘,’ token
32 | static std::pair<nb::ndarray<nb::numpy, uint32_t, nb::ndim<2>>, nb::ndarray<nb::numpy, real_t, nb::ndim<2>>>
| ^
/tmp/pip-req-build-x05q6kos/include/nn_search.hpp:86:54: error: ‘ndim’ is not a member of ‘nb’
86 | static std::pair<nb::ndarray<nb::numpy, int32_t, nb::ndim<2>>, nb::ndarray<nb::numpy, real_t, nb::ndim<2>>>
| ^~~~
/tmp/pip-req-build-x05q6kos/include/nn_search.hpp:86:59: error: template argument 3 is invalid
86 | static std::pair<nb::ndarray<nb::numpy, int32_t, nb::ndim<2>>, nb::ndarray<nb::numpy, real_t, nb::ndim<2>>>
| ^
/tmp/pip-req-build-x05q6kos/include/nn_search.hpp:86:60: error: wrong number of template arguments (1, should be 2)
86 | static std::pair<nb::ndarray<nb::numpy, int32_t, nb::ndim<2>>, nb::ndarray<nb::numpy, real_t, nb::ndim<2>>>
| ^~
In file included from /usr/include/c++/9/bits/stl_algobase.h:64,
from /usr/include/c++/9/bits/char_traits.h:39,
from /usr/include/c++/9/string:40,
from /usr/include/c++/9/stdexcept:39,
from /home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/nanobind.h:31,
from /tmp/pip-req-build-x05q6kos/src/pgeof_ext.cpp:2:
/usr/include/c++/9/bits/stl_pair.h:208:12: note: provided for ‘template<class _T1, class _T2> struct std::pair’
208 | struct pair
| ^~~~
In file included from /tmp/pip-req-build-x05q6kos/src/pgeof_ext.cpp:7:
/tmp/pip-req-build-x05q6kos/include/nn_search.hpp:86:62: error: expected unqualified-id before ‘,’ token
86 | static std::pair<nb::ndarray<nb::numpy, int32_t, nb::ndim<2>>, nb::ndarray<nb::numpy, real_t, nb::ndim<2>>>
| ^
In file included from /tmp/pip-req-build-x05q6kos/src/pgeof_ext.cpp:8:
/tmp/pip-req-build-x05q6kos/include/pgeof.hpp:77:59: error: ‘ndim’ is not a member of ‘nb’
77 | RefCloud~
/tmp/pip-req-build-x05q6kos/include/pgeof.hpp:84:35: error: ‘nn’ was not declared in this scope; did you mean ‘nb’?
84 | const uint32_t~~
/tmp/pip-req-build-x05q6kos/include/pgeof.hpp:102:25: error: ‘k_min’ was not declared in this scope
102 | if (k_nn >= k_min)
| ^~~~~
/tmp/pip-req-build-x05q6kos/include/pgeof.hpp: In function ‘nanobind::ndarray<nanobind::numpy, real_t, nanobind::shape<18446744073709551615, feature_count> > pgeof::compute_geometric_features(pgeof::RefCloud~~
/tmp/pip-req-build-x05q6kos/include/pgeof.hpp: At global scope:
/tmp/pip-req-build-x05q6kos/include/pgeof.hpp:159:59: error: ‘ndim’ is not a member of ‘nb’
159 | RefCloud~~~
| check_scales
/tmp/pip-req-build-x05q6kos/include/pgeof.hpp:166:35: error: ‘nn_ptr’ was not declared in this scope
166 | const size_t n_points = nn_ptr.size() - 1; // number of points is not determined by xyz
| ^~
/tmp/pip-req-build-x05q6kos/include/pgeof.hpp:167:35: error: ‘k_scales’ was not declared in this scope; did you mean ‘n_scales’?
167 | const size_t n_scales = k_scales.size();
| ^~~~
| n_scales
/tmp/pip-req-build-x05q6kos/include/pgeof.hpp:169:35: error: ‘nn’ was not declared in this scope; did you mean ‘nb’?
169 | const uint32_t nn_data = nn.data();
| ^~
| nb
/tmp/pip-req-build-x05q6kos/include/pgeof.hpp: In lambda function:
/tmp/pip-req-build-x05q6kos/include/pgeof.hpp:182:17: error: ‘verbose’ was not declared in this scope
182 | if (verbose) log::progress(s_point, n_points);
| ^~~
/tmp/pip-req-build-x05q6kos/include/pgeof.hpp: In function ‘nanobind::ndarray<nanobind::numpy, real_t, nanobind::shape<18446744073709551615, 18446744073709551615, feature_count> > pgeof::compute_geometric_features_multiscale(pgeof::RefCloud~~
/tmp/pip-req-build-x05q6kos/include/pgeof.hpp: At global scope:
/tmp/pip-req-build-x05q6kos/include/pgeof.hpp:242:59: error: ‘ndim’ is not a member of ‘nb’
242 | RefCloud~~~
/tmp/pip-req-build-x05q6kos/include/pgeof.hpp:247:35: error: ‘nn_ptr’ was not declared in this scope
247 | const size_t n_points = nn_ptr.size() - 1; // number of points is not determined by xyz
| ^~
/tmp/pip-req-build-x05q6kos/include/pgeof.hpp:249:35: error: ‘nn’ was not declared in this scope; did you mean ‘nb’?
249 | const uint32_t~~
/tmp/pip-req-build-x05q6kos/include/pgeof.hpp:267:25: error: ‘k_min’ was not declared in this scope
267 | if (k_nn >= k_min && k_nn >= k_min_search)
| ^~~~~
/tmp/pip-req-build-x05q6kos/include/pgeof.hpp:267:42: error: ‘k_min_search’ was not declared in this scope
267 | if (k_nn >= k_min && k_nn >= k_min_search)
| ^~~~
/tmp/pip-req-build-x05q6kos/include/pgeof.hpp:278:42: error: ‘k_step’ was not declared in this scope
278 | if ((k > k0) && (k % k_step != 0) && (k != k_nn)) { continue; }
| ^~
/tmp/pip-req-build-x05q6kos/include/pgeof.hpp: In function ‘nanobind::ndarray<nanobind::numpy, real_t, nanobind::shape<18446744073709551615, feature_count> > pgeof::compute_geometric_features_optimal(pgeof::RefCloud~~
/tmp/pip-req-build-x05q6kos/src/pgeof_ext.cpp: In function ‘void nanobind_init_pgeofext(nanobind::module&)’:
/tmp/pip-req-build-x05q6kos/src/pgeof_ext.cpp:119:33: error: ‘nanoflann_knn_search’ is not a member of ‘pgeof’
119 | m.def("knn_search", &pgeof::nanoflann_knn_search~~~~~~~
/tmp/pip-req-build-x05q6kos/src/pgeof_ext.cpp:119:54: error: expected primary-expression before ‘float’
119 | m.def("knn_search", &pgeof::nanoflann_knn_search~~~~~~
/tmp/pip-req-build-x05q6kos/src/pgeof_ext.cpp:132:58: error: expected primary-expression before ‘float’
132 | "radius_search", &pgeof::nanoflann_radius_search~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /tmp/pip-req-build-x05q6kos/src/pgeof_ext.cpp:3:
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/ndarray.h:273:5: note: candidate: ‘nanobind::ndarray~~
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/ndarray.h:273:5: note: candidate expects 1 argument, 3 provided
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/ndarray.h:269:5: note: candidate: ‘nanobind::ndarray~~
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/ndarray.h:269:5: note: candidate expects 1 argument, 3 provided
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/ndarray.h:251:5: note: candidate: ‘nanobind::ndarray~~
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/ndarray.h:252:20: note: no known conversion for argument 2 from ‘~^~
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/ndarray.h:246:14: note: candidate: ‘nanobind::ndarray~~
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/ndarray.h:246:14: note: candidate expects 1 argument, 3 provided
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/ndarray.h:244:5: note: candidate: ‘constexpr nanobind::ndarray~~
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/ndarray.h:244:5: note: candidate expects 0 arguments, 3 provided
In file included from /tmp/pip-req-build-x05q6kos/src/pgeof_ext.cpp:8:
/tmp/pip-req-build-x05q6kos/include/pgeof.hpp: In instantiation of ‘nanobind::ndarray<nanobind::numpy, real_t, nanobind::shape<18446744073709551615, 18446744073709551615> > pgeof::compute_geometric_features_selected(pgeof::RefCloud~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /tmp/pip-req-build-x05q6kos/src/pgeof_ext.cpp:3:
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/ndarray.h:273:5: note: candidate: ‘nanobind::ndarray~~
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/ndarray.h:273:5: note: candidate expects 1 argument, 3 provided
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/ndarray.h:269:5: note: candidate: ‘nanobind::ndarray~~
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/ndarray.h:269:5: note: candidate expects 1 argument, 3 provided
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/ndarray.h:251:5: note: candidate: ‘nanobind::ndarray~~
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/ndarray.h:252:20: note: no known conversion for argument 2 from ‘~^~
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/ndarray.h:246:14: note: candidate: ‘nanobind::ndarray~~
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/ndarray.h:246:14: note: candidate expects 1 argument, 3 provided
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/ndarray.h:244:5: note: candidate: ‘constexpr nanobind::ndarray~~
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/ndarray.h:244:5: note: candidate expects 0 arguments, 3 provided
In file included from /home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/nanobind.h:51,
from /tmp/pip-req-build-x05q6kos/src/pgeof_ext.cpp:2:
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/nb_func.h: In instantiation of ‘PyObject nanobind::detail::func_create(Func&&, Return ()(Args ...), std::index_sequence<Is2 ...>, const Extra& ...) [with bool ReturnRef = false; bool CheckGuard = true; Func = nanobind::ndarray<nanobind::numpy, float, nanobind::shape<18446744073709551615, 11> > (&)(Eigen::Ref<const Eigen::Matrix<float, -1, 3, 1, -1, 3>, 0, Eigen::OuterStride<> >, int); Return = nanobind::ndarray<nanobind::numpy, float, nanobind::shape<18446744073709551615, 11> >; Args = {Eigen::Ref<const Eigen::Matrix<float, -1, 3, 1, -1, 3>, 0, Eigen::OuterStride<-1> >, int}; long unsigned int ...Is = {0, 1}; Extra = {nanobind::scope, nanobind::name, nanobind::arg, nanobind::arg, nanobind::arg, nanobind::arg_v, nanobind::arg_v, char [1230]}; PyObject = _object; std::index_sequence<Is2 ...> = std::integer_sequence<long unsigned int, 0, 1>]’:
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/nb_func.h:161:37: required from ‘void nanobind::cpp_function_def(Return ()(Args ...), const Extra& ...) [with Return = nanobind::ndarray<nanobind::numpy, float, nanobind::shape<18446744073709551615, 11> >; Args = {Eigen::Ref<const Eigen::Matrix<float, -1, 3, 1, -1, 3>, 0, Eigen::OuterStride<-1> >, int}; Extra = {nanobind::scope, nanobind::name, nanobind::arg, nanobind::arg, nanobind::arg, nanobind::arg_v, nanobind::arg_v, char [1230]}]’
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/nbfunc.h:230:21: required from ‘nanobind::module& nanobind::module_::def(const char, Func&&, const Extra& ...) [with Func = nanobind::ndarray<nanobind::numpy, float, nanobind::shape<18446744073709551615, 11> > ()(Eigen::Ref<const Eigen::Matrix<float, -1, 3, 1, -1, 3>, 0, Eigen::OuterStride<> >, int); Extra = {nanobind::arg, nanobind::arg, nanobind::arg, nanobind::arg_v, nanobind::arg_v, char [1230]}]’
/tmp/pip-req-build-x05q6kos/src/pgeof_ext.cpp:59:11: required from here
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/nb_func.h:49:39: error: static assertion failed: The number of nb::arg annotations must match the argument count!
49 | static_assert(nargs_provided == 0 || nargs_provided + is_method_det == nargs,
| ~~~~^~~~~~~~~~
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/nb_func.h: In instantiation of ‘PyObject nanobind::detail::func_create(Func&&, Return ()(Args ...), std::index_sequence<Is2 ...>, const Extra& ...) [with bool ReturnRef = false; bool CheckGuard = true; Func = nanobind::ndarray<nanobind::numpy, float, nanobind::shape<18446744073709551615, 18446744073709551615, 11> > (&)(Eigen::Ref<const Eigen::Matrix<float, -1, 3, 1, -1, 3>, 0, Eigen::OuterStride<> >, int); Return = nanobind::ndarray<nanobind::numpy, float, nanobind::shape<18446744073709551615, 18446744073709551615, 11> >; Args = {Eigen::Ref<const Eigen::Matrix<float, -1, 3, 1, -1, 3>, 0, Eigen::OuterStride<-1> >, int}; long unsigned int ...Is = {0, 1}; Extra = {nanobind::scope, nanobind::name, nanobind::arg, nanobind::arg, nanobind::arg, nanobind::arg, nanobind::arg_v, char [1278]}; PyObject = _object; std::index_sequence<Is2 ...> = std::integer_sequence<long unsigned int, 0, 1>]’:
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/nb_func.h:161:37: required from ‘void nanobind::cpp_function_def(Return ()(Args ...), const Extra& ...) [with Return = nanobind::ndarray<nanobind::numpy, float, nanobind::shape<18446744073709551615, 18446744073709551615, 11> >; Args = {Eigen::Ref<const Eigen::Matrix<float, -1, 3, 1, -1, 3>, 0, Eigen::OuterStride<-1> >, int}; Extra = {nanobind::scope, nanobind::name, nanobind::arg, nanobind::arg, nanobind::arg, nanobind::arg, nanobind::arg_v, char [1278]}]’
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/nbfunc.h:230:21: required from ‘nanobind::module& nanobind::module_::def(const char, Func&&, const Extra& ...) [with Func = nanobind::ndarray<nanobind::numpy, float, nanobind::shape<18446744073709551615, 18446744073709551615, 11> > ()(Eigen::Ref<const Eigen::Matrix<float, -1, 3, 1, -1, 3>, 0, Eigen::OuterStride<> >, int); Extra = {nanobind::arg, nanobind::arg, nanobind::arg, nanobind::arg, nanobind::arg_v, char [1278]}]’
/tmp/pip-req-build-x05q6kos/src/pgeof_ext.cpp:86:11: required from here
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/nb_func.h:49:39: error: static assertion failed: The number of nb::arg annotations must match the argument count!
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/nb_func.h: In instantiation of ‘PyObject nanobind::detail::func_create(Func&&, Return ()(Args ...), std::index_sequence<Is2 ...>, const Extra& ...) [with bool ReturnRef = false; bool CheckGuard = true; Func = nanobind::ndarray<nanobind::numpy, float, nanobind::shape<18446744073709551615, 12> > (&)(Eigen::Ref<const Eigen::Matrix<float, -1, 3, 1, -1, 3>, 0, Eigen::OuterStride<> >, int); Return = nanobind::ndarray<nanobind::numpy, float, nanobind::shape<18446744073709551615, 12> >; Args = {Eigen::Ref<const Eigen::Matrix<float, -1, 3, 1, -1, 3>, 0, Eigen::OuterStride<-1> >, int}; long unsigned int ...Is = {0, 1}; Extra = {nanobind::scope, nanobind::name, nanobind::arg, nanobind::arg, nanobind::arg, nanobind::arg_v, nanobind::arg_v, nanobind::arg_v, nanobind::arg_v, char [1705]}; PyObject = _object; std::index_sequence<Is2 ...> = std::integer_sequence<long unsigned int, 0, 1>]’:
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/nb_func.h:161:37: required from ‘void nanobind::cpp_function_def(Return ()(Args ...), const Extra& ...) [with Return = nanobind::ndarray<nanobind::numpy, float, nanobind::shape<18446744073709551615, 12> >; Args = {Eigen::Ref<const Eigen::Matrix<float, -1, 3, 1, -1, 3>, 0, Eigen::OuterStride<-1> >, int}; Extra = {nanobind::scope, nanobind::name, nanobind::arg, nanobind::arg, nanobind::arg, nanobind::arg_v, nanobind::arg_v, nanobind::arg_v, nanobind::arg_v, char [1705]}]’
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/nbfunc.h:230:21: required from ‘nanobind::module& nanobind::module_::def(const char, Func&&, const Extra& ...) [with Func = nanobind::ndarray<nanobind::numpy, float, nanobind::shape<18446744073709551615, 12> > ()(Eigen::Ref<const Eigen::Matrix<float, -1, 3, 1, -1, 3>, 0, Eigen::OuterStride<> >, int); Extra = {nanobind::arg, nanobind::arg, nanobind::arg, nanobind::arg_v, nanobind::arg_v, nanobind::arg_v, nanobind::arg_v, char [1705]}]’
/tmp/pip-req-build-x05q6kos/src/pgeof_ext.cpp:118:11: required from here
/home/vaibhav/conda3v2/envs/superpoint/lib/python3.8/site-packages/nanobind/include/nanobind/nb_func.h:49:39: error: static assertion failed: The number of nb::arg annotations must match the argument count!
ninja: build stopped: subcommand failed.
*** CMake build failed
[end of output]note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for pgeof Failed to build pgeof ERROR: Could not build wheels for pgeof, which is required to install pyproject.toml-based projects
I am using Ubuntu 20.04 and Cuda 11.8. Also, it is same case as @noisyneighbour. Last time it went fine, but this time, getting this issue. Please have a look. Thankyou for considering.
drprojects
rjanvier
noisyneighbour
Avril-Dragon
I am running into trouble installing the library using pip. It looks like an issue with the nanobind library. The last time I installed pgeof it went fine (a couple of months ago). The installation ends with:
Full log trace
python -m pip install pgeof Collecting pgeof Downloading pgeof-0.2.0.tar.gz (69.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 69.0/69.0 MB 7.0 MB/s eta 0:00:00 Installing build dependencies ... done Getting requirements to build wheel ... done Installing backend dependencies ... done Preparing metadata (pyproject.toml) ... done Collecting numpy<2,>=1.7 (from pgeof) Using cached numpy-1.24.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.6 kB) Using cached numpy-1.24.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.3 MB) Building wheels for collected packages: pgeof Building wheel for pgeof (pyproject.toml) ... error error: subprocess-exited-with-error × Building wheel for pgeof (pyproject.toml) did not run successfully. │ exit code: 1 ╰─> [110 lines of output] *** scikit-build-core 0.9.4 using CMake 3.27.7 (wheel) *** Configuring CMake... 2024-05-31 11:06:57,601 - scikit_build_core - WARNING - Can't find a Python library, got libdir=/home/matic/anaconda3/envs/test-env/lib, ldlibrary=libpython3.8.a, multiarch=x86_64-linux-gnu, masd=None loading initial cache file build/cp38-cp38-linux_x86_64/CMakeInit.txt -- The C compiler identification is GNU 9.4.0 -- The CXX compiler identification is GNU 9.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python: /home/matic/anaconda3/envs/test-env/bin/python (found suitable version "3.8.19", minimum required is "3.8") found components: Interpreter Development.Module -- Configuring done (0.4s) -- Generating done (0.0s) -- Build files have been written to: /tmp/pip-install-i_isslon/pgeof_16416ab81e6a4431b1b2dc0f09770a72/build/cp38-cp38-linux_x86_64 *** Building project with Ninja... [1/13] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-34w23q9k/overlay/lib/python3.8/site-packages/nanobind/src/nb_static_property.cpp.o [2/13] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-34w23q9k/overlay/lib/python3.8/site-packages/nanobind/src/implicit.cpp.o [3/13] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-34w23q9k/overlay/lib/python3.8/site-packages/nanobind/src/trampoline.cpp.o [4/13] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-34w23q9k/overlay/lib/python3.8/site-packages/nanobind/src/nb_internals.cpp.o [5/13] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-34w23q9k/overlay/lib/python3.8/site-packages/nanobind/src/error.cpp.o [6/13] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-34w23q9k/overlay/lib/python3.8/site-packages/nanobind/src/nb_ndarray.cpp.o [7/13] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-34w23q9k/overlay/lib/python3.8/site-packages/nanobind/src/common.cpp.o [8/13] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-34w23q9k/overlay/lib/python3.8/site-packages/nanobind/src/nb_enum.cpp.o [9/13] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-34w23q9k/overlay/lib/python3.8/site-packages/nanobind/src/nb_func.cpp.o [10/13] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-34w23q9k/overlay/lib/python3.8/site-packages/nanobind/src/nb_type.cpp.o [11/13] Linking CXX static library libnanobind-static.a [12/13] Building CXX object CMakeFiles/pgeof_ext.dir/src/pgeof_ext.cpp.o FAILED: CMakeFiles/pgeof_ext.dir/src/pgeof_ext.cpp.o /usr/bin/c++ -Dpgeof_ext_EXPORTS -I/tmp/pip-install-i_isslon/pgeof_16416ab81e6a4431b1b2dc0f09770a72/include -I/tmp/pip-install-i_isslon/pgeof_16416ab81e6a4431b1b2dc0f09770a72/third_party/eigen -I/tmp/pip-install-i_isslon/pgeof_16416ab81e6a4431b1b2dc0f09770a72/third_party/nanoflann/include -I/tmp/pip-install-i_isslon/pgeof_16416ab81e6a4431b1b2dc0f09770a72/third_party/taskflow -I/home/matic/anaconda3/envs/test-env/include/python3.8 -I/tmp/pip-build-env-34w23q9k/overlay/lib/python3.8/site-packages/nanobind/include -O3 -DNDEBUG -std=gnu++17 -flto -fno-fat-lto-objects -fPIC -fvisibility=hidden -fno-stack-protector -ffunction-sections -fdata-sections -MD -MT CMakeFiles/pgeof_ext.dir/src/pgeof_ext.cpp.o -MF CMakeFiles/pgeof_ext.dir/src/pgeof_ext.cpp.o.d -o CMakeFiles/pgeof_ext.dir/src/pgeof_ext.cpp.o -c /tmp/pip-install-i_isslon/pgeof_16416ab81e6a4431b1b2dc0f09770a72/src/pgeof_ext.cpp In file included from /tmp/pip-install-i_isslon/pgeof_16416ab81e6a4431b1b2dc0f09770a72/src/pgeof_ext.cpp:8: /tmp/pip-install-i_isslon/pgeof_16416ab81e6a4431b1b2dc0f09770a72/include/pgeof.hpp:76:58: error: type/value mismatch at argument 1 in template parameter list for ‘templateI tried installing inside a fresh conda environment using python3.8 and 3.9, both unsuccessful. Installation using install.sh inside the SPT repo also failed with the same error. Googling I found it could also be an issue with non-upgraded pip, wheel, but trying that didn't fix my issue.
I am using Ubuntu 20.04.4 LTS, CUDA Version 12.4
Conda list of the fresh python3.9 conda environment
# Name Version Build Channel _libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 2_gnu conda-forge bzip2 1.0.8 hd590300_5 conda-forge ca-certificates 2024.2.2 hbcca054_0 conda-forge ld_impl_linux-64 2.40 hf3520f5_1 conda-forge libffi 3.4.2 h7f98852_5 conda-forge libgcc-ng 13.2.0 h77fa898_7 conda-forge libgomp 13.2.0 h77fa898_7 conda-forge libnsl 2.0.1 hd590300_0 conda-forge libsqlite 3.45.3 h2797004_0 conda-forge libuuid 2.38.1 h0b41bf4_0 conda-forge libxcrypt 4.4.36 hd590300_1 conda-forge libzlib 1.2.13 h4ab18f5_6 conda-forge ncurses 6.5 h59595ed_0 conda-forge openssl 3.3.0 h4ab18f5_3 conda-forge pip 24.0 pyhd8ed1ab_0 conda-forge python 3.9.19 h0755675_0_cpython conda-forge readline 8.2 h8228510_1 conda-forge setuptools 70.0.0 pyhd8ed1ab_0 conda-forge tk 8.6.13 noxft_h4845f30_101 conda-forge tzdata 2024a h0c530f3_0 conda-forge wheel 0.43.0 pyhd8ed1ab_1 conda-forge xz 5.2.6 h166bdaf_0 conda-forgeAny help is appreciated!