According to the config file default settings, Safezone should be Pink (FF00FF) and Warzone Red (FF0000)
EDIT: It also seems that the faction homes doesn't appears at all on the dynmap (tried various things, never got the little flag icon to show up on the dynmap.)
I am closing this issue due to its age with the assumption it is no longer a problem. If you encounter this problem, or a similar problem, please create a new issue for it.
The dynmap colors doesn't seem to be applying for SafeZone and Warzone (player created factions does seem to work though)
Here is the default settings: https://i.imgur.com/Q9hl8N9.png
Result: https://i.imgur.com/0P87HDt.png
According to the config file default settings, Safezone should be Pink (FF00FF) and Warzone Red (FF0000)
EDIT: It also seems that the faction homes doesn't appears at all on the dynmap (tried various things, never got the little flag icon to show up on the dynmap.)