drzhelnov / zheln.github.io

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Rewrite citations to show their Zheln form #15

Closed pvzhelnov closed 4 years ago

pvzhelnov commented 4 years ago

For them to show like this:

Zhelnov P. A critical appraisal of ‘Rai B, Shukla A, Dwivedi LK. Estimates of serial interval for COVID-19: A systematic review and meta-analysis. Clin Epidemiol Glob Health. 2020 Aug 26. doi: 10.1016/j.cegh.2020.08.007. Epub ahead of print. PMID: 32869006; PMCID: PMC7448781’. Zheln. 2020 Sep 2;36–38(1):99. URL: https://zheln.com/record/2020/09/02/99.

where:

pvzhelnov commented 4 years ago

so the results count (309 records) won’t align with the current replicated search (409 results; see a detailed comparison of these two record subsets)

By the way, this is the full Replicated Systematic Subset (RSSB) PubMed search to retrieve the 409 September 2, 2020, records (search version as by the commit ae408b9d328303490028a406d4d1d3b9bcf43993):

(
    (
        (
            (
                (
                    (
                        "systematic review"[ti] OR "systematic literature review"[ti] OR "systematic scoping review"[ti] OR "systematic narrative review"[ti] OR "systematic qualitative review"[ti] OR "systematic evidence review"[ti] OR "systematic quantitative review"[ti] OR "systematic meta review"[ti] OR "systematic critical review"[ti] OR "systematic mixed studies review"[ti] OR "systematic mapping review"[ti] OR "systematic cochrane review"[ti] OR "systematic search and review"[ti] OR "systematic integrative review"[ti]
                    )
                    AND
                    1865/01/01:2020/09/02[crdt]
                )
                NOT
                (
                    "comment"[pt]
                    AND
                    1865/01/01:2020/09/02[dcom]
                )
                NOT
                (
                    (
                        "protocol"[ti] OR "protocols"[ti]
                    )
                    AND
                    1865/01/01:2020/09/02[crdt]
                )
            )
            NOT
            (
                "medline"[sb]
                AND
                1865/01/01:2020/09/02[dcom]
            )
        )
        OR
        (
            (
                "cochrane database syst rev"[ta]
                AND
                1865/01/01:2020/09/02[crdt]
            )
            AND
            (
                "review"[pt]
                AND
                1865/01/01:2020/09/02[dcom]
            )
        )
        OR
        (
            "systematic review"[pt]
            AND
            1865/01/01:2020/09/02[dcom]
        )
    )
    OR
    (
        (
            (
                "systematic review"[ti]
                AND
                1865/01/01:2020/09/02[crdt]
            )
            OR
            (
                "meta-analysis"[pt]
                AND
                1865/01/01:2020/09/02[dcom]
            )
            OR
            (
                (
                    "meta analysis"[ti] OR "systematic literature review"[ti]
                )
                AND
                1865/01/01:2020/09/02[crdt]
            )
            OR
            (
                (
                    "this systematic review"[tw] OR "pooling project"[tw]
                )
                AND
                (
                    1865/01/01:2020/09/02[dcom]
                    OR
                    1865/01/01:2020/09/02[mhda]
                )
            )
            OR
            (
                (
                    "this systematic review"[tiab] OR "pooling project"[tiab]
                )
                AND
                1865/01/01:2020/09/02[crdt]
            )
            OR
            (
                (
                    "systematic review"[tiab]
                    AND
                    1865/01/01:2020/09/02[crdt]
                )
                AND
                (
                    "review"[pt]
                    AND
                    1865/01/01:2020/09/02[dcom]
                )
            )
            OR
            (
                (
                    "meta synthesis"[ti] OR "meta analy*"[ti]
                )
                AND
                1865/01/01:2020/09/02[crdt]
            )
            OR
            (
                (
                    "integrative review"[tw] OR "integrative research review"[tw] OR "rapid review"[tw] OR "umbrella review"[tw]
                )
                AND
                (
                    1865/01/01:2020/09/02[dcom]
                    OR
                    1865/01/01:2020/09/02[mhda]
                )
            )
            OR
            (
                (
                    "integrative review"[tiab] OR "integrative research review"[tiab] OR "rapid review"[tiab] OR "umbrella review"[tiab]
                )
                AND
                1865/01/01:2020/09/02[crdt]
            )
            OR
            (
                (
                    "consensus development conference"[pt] OR "practice guideline"[pt]
                )
                AND
                1865/01/01:2020/09/02[dcom]
            )
            OR
            (
                (
                    "drug class reviews"[ti] OR "cochrane database syst rev"[ta] OR "acp journal club"[ta] OR "health technol assess"[ta] OR "evid rep technol assess summ"[ta] OR "jbi database system rev implement rep"[ta]
                )
                AND
                1865/01/01:2020/09/02[crdt]
            )
            OR
            (
                "clinical guideline"[tw]
                AND
                "management"[tw]
                AND
                (
                    1865/01/01:2020/09/02[dcom]
                    OR
                    1865/01/01:2020/09/02[mhda]
                )
            )
            OR
            (
                "clinical guideline"[tiab]
                AND
                "management"[tiab]
                AND
                1865/01/01:2020/09/02[crdt]
            )
            OR
            (
                (
                    (
                        "evidence based"[ti]
                        AND
                        1865/01/01:2020/09/02[crdt]
                    )
                    OR
                    (
                        "evidence-based medicine"[mh]
                        AND
                        1865/01/01:2020/09/02[mhda]
                    )
                    OR
                    (
                        (
                            "best practice*"[ti] OR "evidence synthesis"[tiab]
                        )
                        AND
                        1865/01/01:2020/09/02[crdt]
                    )
                )
                AND
                (
                    (
                        (
                            "review"[pt] OR "evaluation study"[pt] OR "validation study"[pt] OR "guideline"[pt] OR "pmcbook"[all]
                        )
                        AND
                        1865/01/01:2020/09/02[dcom]
                    )
                    OR
                    (
                        (
                            "diseases category"[mh] OR "behavior and behavior mechanisms"[mh] OR "therapeutics"[mh]
                        )
                        AND
                        1865/01/01:2020/09/02[mhda]
                    )
                )
            )
            OR
            (
                (
                    (
                        (
                            "systematic"[tw] OR "systematically"[tw] OR "study selection"[tw]
                            OR
                            (
                                (
                                    "predetermined"[tw] OR "inclusion"[tw]
                                )
                                AND
                                "criteri*"[tw]
                            )
                            OR
                            "exclusion criteri*"[tw] OR "main outcome measures"[tw] OR "standard of care"[tw] OR "standards of care"[tw]
                        )
                        AND
                        (
                            1865/01/01:2020/09/02[dcom]
                            OR
                            1865/01/01:2020/09/02[mhda]
                        )
                    )
                    OR
                    (
                        (
                            "systematic"[tiab] OR "systematically"[tiab] OR "study selection"[tiab]
                            OR
                            (
                                (
                                    "predetermined"[tiab] OR "inclusion"[tiab]
                                )
                                AND
                                "criteri*"[tiab]
                            )
                            OR
                            "exclusion criteri*"[tiab] OR "main outcome measures"[tiab] OR "standard of care"[tiab] OR "standards of care"[tiab]
                        )
                        AND
                        1865/01/01:2020/09/02[crdt]
                    )
                    OR
                    (
                        "critical"[tiab] 
                        AND
                        1865/01/01:2020/09/02[crdt]
                    )
                )
                AND
                (
                    (
                        (
                            "survey"[tiab] OR "surveys"[tiab] OR "review"[tiab] OR "reviews"[tiab] OR "analysis"[ti] OR "critique"[tiab]
                        )
                        AND
                        1865/01/01:2020/09/02[crdt]
                    )
                    OR
                    (
                        (
                            "overview*"[tw] OR "search*"[tw] OR "handsearch"[tw] OR "appraisal"[tw]
                        )
                        AND
                        (
                            1865/01/01:2020/09/02[dcom]
                            OR
                            1865/01/01:2020/09/02[mhda]
                        )
                    )
                    OR
                    (
                        (
                            "overview*"[tiab] OR "search*"[tiab] OR "handsearch"[tiab] OR "appraisal"[tiab]
                        )
                        AND
                        1865/01/01:2020/09/02[crdt]
                    )
                    OR
                    (
                        (
                            (
                                "reduction"[tw]
                                AND
                                (
                                    1865/01/01:2020/09/02[dcom]
                                    OR
                                    1865/01/01:2020/09/02[mhda]
                                )
                            )
                            OR
                            (
                                "reduction"[tiab]
                                AND
                                1865/01/01:2020/09/02[crdt]
                            )
                        )
                        AND
                        (
                            (
                                "risk"[mh]
                                AND
                                1865/01/01:2020/09/02[mhda]
                            )
                            OR
                            (
                                (
                                    "risk"[tw]
                                    AND
                                    (
                                        1865/01/01:2020/09/02[dcom]
                                        OR
                                        1865/01/01:2020/09/02[mhda]
                                    )
                                )
                                OR
                                (
                                    "risk"[tiab]
                                    AND
                                    1865/01/01:2020/09/02[crdt]
                                )
                            )
                        )
                        AND
                        (
                            (
                                (
                                    "death"[mh] OR "recurrence"[mh]
                                )
                                AND
                                1865/01/01:2020/09/02[mhda]
                            )
                            OR
                            (
                                (
                                    "death"[all] OR "recurrence"[all]
                                )
                                AND
                                1865/01/01:2020/09/02[dcom]
                            )
                        )
                    )
                )
                AND
                (
                    (
                        (
                            "literature"[tiab] OR "articles"[tiab] OR "publications"[tiab] OR "publication"[tiab] OR "bibliography"[tiab] OR "bibliographies"[tiab] OR "published"[tiab] OR "database"[tiab] OR "internet"[tiab] OR "textbooks"[tiab] OR "trials"[tiab]
                        )
                        AND
                        1865/01/01:2020/09/02[crdt]
                    )
                    OR
                    (
                        (
                            "pooled data"[tw] OR "unpublished"[tw] OR "citation"[tw] OR "citations"[tw] OR "references"[tw] OR "scales"[tw] OR "papers"[tw] OR "datasets"[tw] OR "meta analy*"[tw]
                        )
                        AND
                        (
                            1865/01/01:2020/09/02[dcom]
                            OR
                            1865/01/01:2020/09/02[mhda]
                        )
                    )
                    OR
                    (
                        (
                            "pooled data"[tiab] OR "unpublished"[tiab] OR "citation"[tiab] OR "citations"[tiab] OR "references"[tiab] OR "scales"[tiab] OR "papers"[tiab] OR "datasets"[tiab] OR "meta analy*"[tiab]
                        )
                        AND
                        1865/01/01:2020/09/02[crdt]
                    )
                    OR
                    (
                        "clinical"[tiab]
                        AND
                        "studies"[tiab]
                        AND
                        1865/01/01:2020/09/02[crdt]
                    )
                    OR
                    (
                        "treatment outcome"[mh]
                        AND
                        1865/01/01:2020/09/02[mhda]
                    )
                    OR
                    (
                        "treatment outcome"[tw]
                        AND
                        (
                            1865/01/01:2020/09/02[dcom]
                            OR
                            1865/01/01:2020/09/02[mhda]
                        )
                    )
                    OR
                    (
                        "treatment outcome"[tiab]
                        AND
                        1865/01/01:2020/09/02[crdt]
                    )
                    OR
                    (
                        "pmcbook"[all]
                        AND
                        1865/01/01:2020/09/02[dcom]
                    )
                )
            )
        )
        NOT
        (
            (
                "letter"[pt] OR "newspaper article"[pt]
            )
            AND
            1865/01/01:2020/09/02[dcom]
        )
    )
) AND (2020/09/02:2020/09/02[crdt] OR 2020/09/02:2020/09/02[dcom] OR 2020/09/02:2020/09/02[mhda])
pvzhelnov commented 4 years ago

page is the record number in the PubMed search results

Effectively, since the Day 2 of the reported period (corresponding to one volume), the record count continues from the last Day 1 record number (e.g. starting from 410 for Sep 3, 2020, etc.). Therefore, starting from the Day 2, the record numbers are calculated as follows:

previous_day_last_record_number + this_day_record_number

pvzhelnov commented 4 years ago

page is the record number in the PubMed search results

Page format underwent major updates, see fe5675a687e2e832251b6dd0d19e0731d69a924b