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dsarov / ARDaP

Comprehensive resistance detection from WGS data
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feature request: fast test data (config file) #31

Open chrisgulvik opened 1 year ago

chrisgulvik commented 1 year ago

Would you consider adding a small/fast test set to just make sure the wf works?

Ideally being able to invoke -profile test (grabs from conf/test.config).

I just made a new env forgot to do the pip installs but took awhile to realize after processing larger datasets. Feel free to use our Burkholderia pseudomallei MD2019a subsampled set (top 250k reads from SRR16343585) already on github or something of your own.

Thanks again for this wf!

dsarov commented 1 year ago

Great idea! I've got a test set that I use for P. aeruginosa but will update with one for B. pseudomallei. Thanks!