Here I am with another error... again, on a Mac M1, and with PyRate and numpy fully up-to-date. When combining log files across 10 replicates (with preservation prior TPP), I run into the following error:
Better use the -logCombRJ instead of -logComb when you aim to combine the output of RJMCMC analyses
The root of the problem is that the number of columns in the mcmc.log files differ among your replicates. The "52" and "50" on your screenshot (9901, 52) indicate the number of rows and columns. In comparison to replicates 1 and 10, replicate 2 misses either one species or two shift points of sampling rate (-qtimes).
Hi again!
Here I am with another error... again, on a Mac M1, and with PyRate and numpy fully up-to-date. When combining log files across 10 replicates (with preservation prior TPP), I run into the following error:
Any ideas would be appreciated!
Best wishes, Laura