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dsp-uga / Johnson

Implementation of Project 3 for Data Science Practicum CSCI 8360 -- Neuron Segmentation. Datasets are from codeneuro website
http://neurofinder.codeneuro.org/
MIT License
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fixed argument structures #17

Closed whusym closed 6 years ago

whusym commented 6 years ago

I fixed the structures for options ThunderNMF and unet based on #16. Now if we wanna run either of the two option, we can try:

python -m [option-name] [args-for-the-option]

For instance, if we wanna run ThunderNMF from local base (with my local path coded in) on test set 00.00, we can do

python -m ThunderNMF --setName=00.00 --base=local

I try to write the help messages as detailed as possible, but please create more tickets if any of these doesn't make sense.

Also, if we just wanna check the info, including python, tf version etc. in ThunderNMF or UNET, we can use (here I use UNET as an example)

python -m UNET info

UNET is all capped. It's function, unet is lower-cased

melanieihuei commented 6 years ago

are you going to create a python script for choosing the options? I can make cnmf script as this and i'll move the use_case folders to root.

whusym commented 6 years ago

I haven't decided it yet. Open to suggestions!