dssg / triage

General Purpose Risk Modeling and Prediction Toolkit for Policy and Social Good Problems
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Scheduled monthly dependency update for April #842

Closed pyup-bot closed 3 years ago

pyup-bot commented 3 years ago

Update pymdown-extensions from 7.1 to 8.1.1.

Changelog ### 8.1.1 ``` - **FIX**: Ensure content immediately before Details content or Tabbed content gets preserved. - **FIX**: StripHTML: Fix some corner cases related to stripping comments. ``` ### 8.1 ``` - **NEW**: Drop support for Python 3.5. - **NEW**: Officially support Python 3.9. - **NEW**: Tabbed titles can now have simple Markdown in them which can be parsed and rendered (like emoji, bold, etc.). - **FIX**: Avoid parsing script tags in PathConverter and B64 extensions. ``` ### 8.0.1 ``` - **FIX**: Fix issue with `pymdownx-inline` an Pygments 2.7+. ``` ### 8.0 ``` Please see [Release Notes](./releases/8.0.md8.0) for details on upgrading to 8.0. - **NEW**: Added SaneHeaders extension. - **NEW**: SuperFences \& InlineHilite: gracefully handle failing custom formatters and/or validators. Users should add their own debug code to their formatter/validator if they suspect it isn't working. - **NEW**: SuperFences: if a custom fence validator fails, try the next custom fence until all are exhausted. - **NEW**: SuperFences: no longer allow custom options in the form `key=` (no value). Only keys with values or keys with no value and no `=` are accepted. Keys with no value will now assume the value to be the key name. - **NEW**: SuperFences: if `attr_list` extension is enabled, fenced code that use brace attribute list style headers (` {lang id .class attr=value}`) will attach arbitrary attributes that are included in the header to the code element. - **NEW**: SuperFences: when Pygments is disabled, options (such as `linenums`) included in fenced code headers no longer do anything. If `attr_list` is enabled, and the brace header is used, such options will be treated as HTML attributes. JavaScript highlighter options should be defined in the brace header form with `attr_list` enabled in order to generate appropriate, compatible HTML with the chosen JavaScript highlighter. - **NEW**: SuperFences: backwards incompatible changes where made to custom fence API. See [Release Notes](./releases/8.0.md8.0) for instructions on how to migrate to the new API. Some temporary support for most of the old format is in place, but is deprecated. - **NEW**: SuperFences: has removed legacy code tab feature. Associated `legacy_tab_classes` option has been removed. Please use the Tabbed extension to create general purpose tabs for code blocks or other content. - **NEW**: Highlight: add new option `language_prefix` which controls the prefix applied to language classes when Pygments is not being used. - **NEW**: Highlight: A new option called `code_attr_on_pre` was added to the Highlight extension and controls whether language classes, and any ids, attributes, and classes that are defined in fenced code attribute list style headers, are attached to the code element or pre element. This has effect when using Pygments. - **NEW**: Highlight: option `linenums` now defaults to `None` and accepts `None`, `True`, or `False`. `None` is disabled by default, but can be enabled per code block. `True` enables line numbers globally. `False` disables globally and cannot be enabled manually per code block. - **NEW**: ExtraRawHTML: remove extension. - **FIX**: Fix issues with complex emphasis combinations in BetterEm. - **FIX**: Details: fix corner cases related to extension and lists. - **FIX**: Tabbed: fix corner cases related to extension and lists. - **FIX**: EscapeAll: Handle HTML entities special. - **FIX**: SuperFences: Fix parameter unpacking bug. ```
Links - PyPI: https://pypi.org/project/pymdown-extensions - Changelog: https://pyup.io/changelogs/pymdown-extensions/ - Repo: https://github.com/facelessuser/pymdown-extensions

Update mkdocs-material from 7.0.6 to 7.1.0.

Changelog ### 7.1.0 ``` * Added support for color palette toggle * Added support for back-to-top button * Added latest release to repository info (GitHub) * Slight facelift of repository info (lighter fonts, spacing and icons) mkdocs-material-7.0.7+insiders-2.5.0 (2021-03-28) * Added support for version warning ``` ### 7.0.7 ``` * Updated Hungarian translations * Fixed 2466: Docker image not based on latest Python and Alpine * Fixed 2488: Inconsistent header shadow behavior * Fixed 2492: Inline code blocks in admonition titles missing background mkdocs-material-7.0.6+insiders-2.4.0 (2021-03-20) * Added support for custom admonition icons * Fixed 2444: Code block annotations with extra comments have wrong index mkdocs-material-7.0.6+insiders-2.3.1 (2021-03-14) * Fixed anchor offset for permalinks when using sticky navigation tabs ```
Links - PyPI: https://pypi.org/project/mkdocs-material - Changelog: https://pyup.io/changelogs/mkdocs-material/ - Repo: https://squidfunk.github.io/mkdocs-material/

Update mkdocstrings from 0.12.0 to 0.15.0.

The bot wasn't able to find a changelog for this release. Got an idea?

Links - PyPI: https://pypi.org/project/mkdocstrings - Repo: https://github.com/mkdocstrings/mkdocstrings

Update black from 19.10b0 to 20.8b1.

Changelog ### 20.8b1 ``` _Packaging_ - explicitly depend on Click 7.1.2 or newer as `Black` no longer works with versions older than 7.0 ``` ### 20.8b0 ``` _Black_ - re-implemented support for explicit trailing commas: now it works consistently within any bracket pair, including nested structures (1288 and duplicates) - `Black` now reindents docstrings when reindenting code around it (1053) - `Black` now shows colored diffs (1266) - `Black` is now packaged using 'py3' tagged wheels (1388) - `Black` now supports Python 3.8 code, e.g. star expressions in return statements (1121) - `Black` no longer normalizes capital R-string prefixes as those have a community-accepted meaning (1244) - `Black` now uses exit code 2 when specified configuration file doesn't exit (1361) - `Black` now works on AWS Lambda (1141) - added `--force-exclude` argument (1032) - removed deprecated `--py36` option (1236) - fixed `--diff` output when EOF is encountered (526) - fixed ` fmt: off` handling around decorators (560) - fixed unstable formatting with some ` type: ignore` comments (1113) - fixed invalid removal on organizing brackets followed by indexing (1575) - introduced `black-primer`, a CI tool that allows us to run regression tests against existing open source users of Black (1402) - introduced property-based fuzzing to our test suite based on Hypothesis and Hypothersmith (1566) - implemented experimental and disabled by default long string rewrapping (1132), hidden under a `--experimental-string-processing` flag while it's being worked on; this is an undocumented and unsupported feature, you lose Internet points for depending on it (1609) Vim plugin - prefer virtualenv packages over global packages (1383) ```
Links - PyPI: https://pypi.org/project/black - Changelog: https://pyup.io/changelogs/black/ - Repo: https://github.com/psf/black

Update wheel from 0.34.2 to 0.36.2.

Changelog ### 0.36.2 ``` - Updated vendored ``packaging`` library to v20.8 - Fixed wheel sdist missing ``LICENSE.txt`` - Don't use default ``macos/arm64`` deployment target in calculating the platform tag for fat binaries (PR by Ronald Oussoren) ``` ### 0.36.1 ``` - Fixed ``AssertionError`` when ``MACOSX_DEPLOYMENT_TARGET`` was set to ``11`` (PR by Grzegorz Bokota and François-Xavier Coudert) - Fixed regression introduced in 0.36.0 on Python 2.7 when a custom generator name was passed as unicode (Scikit-build) (``TypeError: 'unicode' does not have the buffer interface``) ``` ### 0.36.0 ``` - Added official Python 3.9 support - Updated vendored ``packaging`` library to v20.7 - Switched to always using LF as line separator when generating ``WHEEL`` files (on Windows, CRLF was being used instead) - The ABI tag is taken from the sysconfig SOABI value. On PyPy the SOABI value is ``pypy37-pp73`` which is not compliant with PEP 3149, as it should have both the API tag and the platform tag. This change future-proofs any change in PyPy's SOABI tag to make sure only the ABI tag is used by wheel. - Fixed regression and test for ``bdist_wheel --plat-name``. It was ignored for C extensions in v0.35, but the regression was not detected by tests. ``` ### 0.35.1 ``` - Replaced install dependency on ``packaging`` with a vendored copy of its ``tags`` module - Fixed ``bdist_wheel`` not working on FreeBSD due to mismatching platform tag name (it was not being converted to lowercase) ``` ### 0.35.0 ``` - Switched to the packaging_ library for computing wheel tags - Fixed a resource leak in ``WheelFile.open()`` (PR by Jon Dufresne) .. _packaging: https://pypi.org/project/packaging/ ```
Links - PyPI: https://pypi.org/project/wheel - Changelog: https://pyup.io/changelogs/wheel/ - Repo: https://github.com/pypa/wheel

Update alembic from 1.4.2 to 1.5.8.

Changelog ### 1.5.8 ``` :released: March 23, 2021 .. change:: :tags: bug, environment :tickets: 816 Fixed regression caused by SQLAlchemy 1.4 where the "alembic current" command would fail due to changes in the ``URL`` object. .. changelog:: ``` ### 1.5.7 ``` :released: March 11, 2021 .. change:: :tags: bug, autogenerate :tickets: 813 Adjusted the recently added :paramref:`.EnvironmentContext.configure.include_name` hook to accommodate for additional object types such as "views" that don't have a parent table, to support third party recipes and extensions. Pull request courtesy Oliver Rice. .. changelog:: ``` ### 1.5.6 ``` :released: March 5, 2021 .. change:: :tags: bug, mssql, operations :tickets: 812 Fixed bug where the "existing_type" parameter, which the MSSQL dialect requires in order to change the nullability of a column in the absence of also changing the column type, would cause an ALTER COLUMN operation to incorrectly render a second ALTER statement without the nullability if a new type were also present, as the MSSQL-specific contract did not anticipate all three of "nullability", "type_" and "existing_type" being sent at the same time. .. change:: :tags: template :ticket: 805 Add async template to Alembic to bootstrap environments that use async DBAPI. Updated the cookbook to include a migration guide on how to adapt an existing enviroment for use with DBAPI drivers. .. changelog:: ``` ### 1.5.5 ``` :released: February 20, 2021 .. change:: :tags: bug Adjusted the use of SQLAlchemy's ".copy()" internals to use "._copy()" for version 1.4.0, as this method is being renamed. .. change:: :tags: bug, environment :tickets: 797 Added new config file option ``prepend_sys_path``, which is a series of paths that will be prepended to sys.path; the default value in newly generated alembic.ini files is ".". This fixes a long-standing issue where for some reason running the alembic command line would not place the local "." path in sys.path, meaning an application locally present in "." and importable through normal channels, e.g. python interpreter, pytest, etc. would not be located by Alembic, even though the ``env.py`` file is loaded relative to the current path when ``alembic.ini`` contains a relative path. To enable for existing installations, add the option to the alembic.ini file as follows:: sys.path path, will be prepended to sys.path if present. defaults to the current working directory. prepend_sys_path = . .. seealso:: :ref:`installation` - updated documentation reflecting that local installation of the project is not necessary if running the Alembic cli from the local path. .. changelog:: ``` ### 1.5.4 ``` :released: February 3, 2021 .. change:: :tags: bug, versioning :tickets: 789 Fixed bug in versioning model where a downgrade across a revision with a dependency on another branch, yet an ancestor is also dependent on that branch, would produce an erroneous state in the alembic_version table, making upgrades impossible without manually repairing the table. .. changelog:: ``` ### 1.5.3 ``` :released: January 29, 2021 .. change:: :tags: bug, autogenerate :tickets: 786 Changed the default ordering of "CREATE" and "DROP" statements indexes and unique constraints within the autogenerate process, so that for example in an upgrade() operation, a particular index or constraint that is to be replaced such as for a casing convention change will not produce any naming conflicts. For foreign key constraint objects, this is already how constraints are ordered, and for table objects, users would normally want to use :meth:`.Operations.rename_table` in any case. .. change:: :tags: bug, autogenerate, mssql :tickets: 787 Fixed assorted autogenerate issues with SQL Server: * ignore default reflected identity on primary_key columns * improve server default comparison .. change:: :tags: bug, mysql, autogenerate :tickets: 788 Fixed issue where autogenerate rendering of ``op.alter_column()`` would fail to include MySQL ``existing_nullable=False`` if the column were part of a primary key constraint within the table metadata. .. changelog:: ``` ### 1.5.2 ``` :released: January 20, 2021 .. change:: :tags: bug, versioning, regression :tickets: 784 Fixed regression where new "loop detection" feature introduced in :ticket:`757` produced false positives for revision names that have overlapping substrings between revision number and down revision and/or dependency, if the downrev/dependency were not in sequence form. .. change:: :tags: bug, environment :tickets: 782 Fixed regression where Alembic would fail to create a transaction properly if the :class:`sqlalchemy.engine.Connection` were a so-called "branched" connection, that is, one where the ``.connect()`` method had been called to create a "sub" connection. .. changelog:: ``` ### 1.5.1 ``` :released: January 19, 2021 .. change:: :tags: bug, installation, commands :tickets: 780 Fixed installation issue where the "templates" directory was not being installed, preventing commands like "list_templates" and "init" from working. .. changelog:: ``` ### 1.5.0 ``` :released: January 18, 2021 .. change:: :tags: usecase, operations :tickets: 730 Added support for rendering of "identity" elements on :class:`.Column` objects, supported in SQLAlchemy via the :class:`.Identity` element introduced in version 1.4. Adding columns with identity is supported on PostgreSQL, MSSQL and Oracle. Changing the identity options or removing it is supported only on PostgreSQL and Oracle. .. change:: :tags: changed, environment To accommodate SQLAlchemy 1.4 and 2.0, the migration model now no longer assumes that the SQLAlchemy Connection will autocommit an individual operation. This essentially means that for databases that use non-transactional DDL (pysqlite current driver behavior, MySQL), there is still a BEGIN/COMMIT block that will surround each individual migration. Databases that support transactional DDL should continue to have the same flow, either per migration or per-entire run, depending on the value of the :paramref:`.Environment.configure.transaction_per_migration` flag. .. change:: :tags: changed, environment A :class:`.CommandError` is raised if a ``sqlalchemy.engine.Engine`` is passed to the :meth:`.MigrationContext.configure` method instead of a ``sqlalchemy.engine.Connection`` object. Previously, this would be a warning only. .. change:: :tags: bug, operations :tickets: 753 Modified the ``add_column()`` operation such that the ``Column`` object in use is shallow copied to a new instance if that ``Column`` is already attached to a ``table()`` or ``Table``. This accommodates for the change made in SQLAlchemy issue 5618 which prohibits a ``Column`` from being associated with multiple ``table()`` objects. This resumes support for using a ``Column`` inside of an Alembic operation that already refers to a parent ``table()`` or ``Table`` as well as allows operation objects just autogenerated to work. .. change:: :tags: feature, autogenerate :tickets: 650 Added new hook :paramref:`.EnvironmentContext.configure.include_name`, which complements the :paramref:`.EnvironmentContext.configure.include_object` hook by providing a means of preventing objects of a certain name from being autogenerated **before** the SQLAlchemy reflection process takes place, and notably includes explicit support for passing each schema name when :paramref:`.EnvironmentContext.configure.include_schemas` is set to True. This is most important especially for enviroments that make use of :paramref:`.EnvironmentContext.configure.include_schemas` where schemas are actually databases (e.g. MySQL) in order to prevent reflection sweeps of the entire server. .. seealso:: :ref:`autogenerate_include_hooks` - new documentation section .. change:: :tags: removed, autogenerate The long deprecated :paramref:`.EnvironmentContext.configure.include_symbol` hook is removed. The :paramref:`.EnvironmentContext.configure.include_object` and :paramref:`.EnvironmentContext.configure.include_name` hooks both achieve the goals of this hook. .. change:: :tags: bug, autogenerate :tickets: 721 Added rendering for the ``Table.prefixes`` element to autogenerate so that the rendered Python code includes these directives. Pull request courtesy Rodrigo Ce Moretto. .. change:: :tags: bug, batch :tickets: 761 Added missing "create comment" feature for columns that are altered in batch migrations. .. change:: :tags: changed :tickets: 748 Alembic 1.5.0 now supports **Python 2.7 and Python 3.6 and above**, as well as **SQLAlchemy 1.3.0 and above**. Support is removed for Python 3 versions prior to 3.6 and SQLAlchemy versions prior to the 1.3 series. .. change:: :tags: bug, batch :tickets: 773 Made an adjustment to the PostgreSQL dialect to allow it to work more effectively in batch mode, where a datatype like Boolean or non-native Enum that may have embedded rules to generate CHECK constraints will be more correctly handled in that these constraints usually will not have been generated on the PostgreSQL backend; previously it would inadvertently assume they existed unconditionally in a special PG-only "drop constraint" step. .. change:: :tags: feature, versioning :tickets: 757 The revision tree is now checked for cycles and loops between revision files when the revision environment is loaded up. Scenarios such as a revision pointing to itself, or a revision that can reach itself via a loop, are handled and will raise the :class:`.CycleDetected` exception when the environment is loaded (expressed from the Alembic commandline as a failure message and nonzero return code). Previously, these situations were silently ignored up front, and the behavior of revision traversal would either be silently incorrect, or would produce errors such as :class:`.RangeNotAncestorError`. Pull request courtesy Koichiro Den. .. change:: :tags: usecase, commands Add ``__main__.py`` file to alembic package to support invocation with ``python -m alembic``. .. change:: :tags: removed, commands Removed deprecated ``--head_only`` option to the ``alembic current`` command .. change:: :tags: removed, operations Removed legacy parameter names from operations, these have been emitting warnings since version 0.8. In the case that legacy version files have not yet been updated, these can be modified directly in order to maintain compatibility: * :meth:`.Operations.drop_constraint` - "type" (use "type_") and "name" (use "constraint_name") * :meth:`.Operations.create_primary_key` - "cols" (use "columns") and "name" (use "constraint_name") * :meth:`.Operations.create_unique_constraint` - "name" (use "constraint_name"), "source" (use "table_name") and "local_cols" (use "columns") * :meth:`.Operations.batch_create_unique_constraint` - "name" (use "constraint_name") * :meth:`.Operations.create_foreign_key` - "name" (use "constraint_name"), "source" (use "source_table"), "referent" (use "referent_table") * :meth:`.Operations.batch_create_foreign_key` - "name" (use "constraint_name"), "referent" (use "referent_table") * :meth:`.Operations.create_check_constraint` - "name" (use "constraint_name"), "source" (use "table_name") * :meth:`.Operations.batch_create_check_constraint` - "name" (use "constraint_name") * :meth:`.Operations.create_index` - "name" (use "index_name") * :meth:`.Operations.drop_index` - "name" (use "index_name"), "tablename" (use "table_name") * :meth:`.Operations.batch_drop_index` - "name" (use "index_name"), * :meth:`.Operations.create_table` - "name" (use "table_name") * :meth:`.Operations.drop_table` - "name" (use "table_name") * :meth:`.Operations.alter_column` - "name" (use "new_column_name") .. changelog:: ``` ### 1.4.3 ``` :released: September 11, 2020 .. change:: :tags: bug, sqlite, batch :tickets: 711 Added support to drop named CHECK constraints that are specified as part of a column, rather than table wide. Previously, only constraints associated with the table were considered. .. change:: :tags: bug, ops, mysql :tickets: 736 Fixed issue where the MySQL dialect would not correctly render the server default of a column in an alter operation, if the operation were programmatically generated from an autogenerate pass as it would not accommodate for the full structure of the DefaultClause construct. .. change:: :tags: bug, sqlite, batch :tickets: 697 Fixed issue where the CAST applied to a JSON column when copying a SQLite table during batch mode would cause the data to be lost, as SQLite's CAST with JSON appears to convert the data to the value "0". The CAST is now skipped in a dialect-specific manner, including for JSON columns on SQLite. Pull request courtesy Sebastián Ramírez. .. change:: :tags: bug, commands :tickets: 694 The ``alembic current`` command no longer creates an ``alembic_version`` table in the database if one does not exist already, returning no version as the current version. This allows checking for migrations in parallel without introducing race conditions. Pull request courtesy Nikolay Edigaryev. .. change:: :tags: bug, batch Fixed issue where columns in a foreign-key referenced table would be replaced with null-type columns during a batch operation; while this did not generally have any side effects, it could theoretically impact a batch operation that also targets that table directly and also would interfere with future changes to the ``.append_column()`` method to disallow implicit replacement of columns. .. change:: :tags: bug, mssql :tickets: 716 Fixed issue where the ``mssql_drop_foreign_key=True`` flag on ``op.drop_column`` would lead to incorrect syntax error due to a typo in the SQL emitted, same typo was present in the test as well so it was not detected. Pull request courtesy Oleg Shigorin. .. changelog:: ```
Links - PyPI: https://pypi.org/project/alembic - Changelog: https://pyup.io/changelogs/alembic/ - Homepage: https://alembic.sqlalchemy.org - Docs: https://pythonhosted.org/alembic/

Update SQLAlchemy from 1.3.18 to 1.4.4.

Changelog ### 1.4.4 ``` :released: March 30, 2021 .. change:: :tags: bug, misc Adjusted the usage of the ``importlib_metadata`` library for loading setuptools entrypoints in order to accommodate for some deprecation changes. .. change:: :tags: bug, postgresql :tickets: 6099 Modified the ``is_disconnect()`` handler for the pg8000 dialect, which now accommodates for a new ``InterfaceError`` emitted by pg8000 1.19.0. Pull request courtesy Hamdi Burak Usul. .. change:: :tags: bug, orm :tickets: 6139 Fixed critical issue in the new :meth:`_orm.PropComparator.and_` feature where loader strategies that emit secondary SELECT statements such as :func:`_orm.selectinload` and :func:`_orm.lazyload` would fail to accommodate for bound parameters in the user-defined criteria in terms of the current statement being executed, as opposed to the cached statement, causing stale bound values to be used. This also adds a warning for the case where an object that uses :func:`_orm.lazyload` in conjunction with :meth:`_orm.PropComparator.and_` is attempted to be serialized; the loader criteria cannot reliably be serialized and deserialized and eager loading should be used for this case. .. change:: :tags: bug, engine :tickets: 6138 Repair wrong arguments to exception handling method in CursorResult. .. change:: :tags: bug, regression, orm :tickets: 6144 Fixed missing method :meth:`_orm.Session.get` from the :class:`_orm.ScopedSession` interface. .. change:: :tags: usecase, engine :tickets: 6155 Modified the context manager used by :class:`_engine.Transaction` so that an "already detached" warning is not emitted by the ending of the context manager itself, if the transaction were already manually rolled back inside the block. This applies to regular transactions, savepoint transactions, and legacy "marker" transactions. A warning is still emitted if the ``.rollback()`` method is called explicitly more than once. .. changelog:: ``` ### 1.4.3 ``` :released: March 25, 2021 .. change:: :tags: bug, orm :tickets: 6069 Fixed a bug where python 2.7.5 (default on CentOS 7) wasn't able to import sqlalchemy, because on this version of Python ``exec "statement"`` and ``exec("statement")`` do not behave the same way. The compatibility ``exec_()`` function was used instead. .. change:: :tags: sqlite, feature, asyncio :tickets: 5920 Added support for the aiosqlite database driver for use with the SQLAlchemy asyncio extension. .. seealso:: :ref:`aiosqlite` .. change:: :tags: bug, regression, orm, declarative :tickets: 6128 Fixed regression where the ``.metadata`` attribute on a per class level would not be honored, breaking the use case of per-class-hierarchy :class:`.schema.MetaData` for abstract declarative classes and mixins. .. seealso:: :ref:`declarative_metadata` .. change:: :tags: bug, mypy Added support for the Mypy extension to correctly interpret a declarative base class that's generated using the :func:`_orm.as_declarative` function as well as the :meth:`_orm.registry.as_declarative_base` method. .. change:: :tags: bug, mypy :tickets: 6109 Fixed bug in Mypy plugin where the Python type detection for the :class:`_types.Boolean` column type would produce an exception; additionally implemented support for :class:`_types.Enum`, including detection of a string-based enum vs. use of Python ``enum.Enum``. .. change:: :tags: bug, reflection, postgresql :tickets: 6129 Fixed reflection of identity columns in tables with mixed case names in PostgreSQL. .. change:: :tags: bug, sqlite, regression :tickets: 5848 Repaired the ``pysqlcipher`` dialect to connect correctly which had regressed in 1.4, and added test + CI support to maintain the driver in working condition. The dialect now imports the ``sqlcipher3`` module for Python 3 by default before falling back to ``pysqlcipher3`` which is documented as now being unmaintained. .. seealso:: :ref:`pysqlcipher` .. change:: :tags: bug, orm :tickets: 6060 Fixed bug where ORM queries using a correlated subquery in conjunction with :func:`_orm.column_property` would fail to correlate correctly to an enclosing subquery or to a CTE when :meth:`_sql.Select.correlate_except` were used in the property to control correlation, in cases where the subquery contained the same selectables as ones within the correlated subquery that were intended to not be correlated. .. change:: :tags: bug, orm :tickets: 6131 Fixed bug where combinations of the new "relationship with criteria" feature could fail in conjunction with features that make use of the new "lambda SQL" feature, including loader strategies such as selectinload and lazyload, for more complicated scenarios such as polymorphic loading. .. change:: :tags: bug, orm :tickets: 6124 Repaired support so that the :meth:`_sql.ClauseElement.params` method can work correctly with a :class:`_sql.Select` object that includes joins across ORM relationship structures, which is a new feature in 1.4. .. change:: :tags: bug, engine, regression :tickets: 6119 Restored the :class:`_engine.ResultProxy` name back to the ``sqlalchemy.engine`` namespace. This name refers to the :class:`_engine.LegacyCursorResult` object. .. change:: :tags: bug, orm :tickets: 6115 Fixed issue where a "removed in 2.0" warning were generated internally by the relationship loader mechanics. .. changelog:: ``` ### 1.4.2 ``` :released: March 19, 2021 .. change:: :tags: bug, orm, dataclasses :tickets: 6093 Fixed issue in new ORM dataclasses functionality where dataclass fields on an abstract base or mixin that contained column or other mapping constructs would not be mapped if they also included a "default" key within the dataclasses.field() object. .. change:: :tags: bug, regression, orm :tickets: 6088 Fixed regression where the :attr:`_orm.Query.selectable` accessor, which is a synonym for :meth:`_orm.Query.__clause_element__`, got removed, it's now restored. .. change:: :tags: bug, engine, regression Restored top level import for ``sqlalchemy.engine.reflection``. This ensures that the base :class:`_reflection.Inspector` class is properly registered so that :func:`_sa.inspect` works for third party dialects that don't otherwise import this package. .. change:: :tags: bug, regression, orm :tickets: 6086 Fixed regression where use of an unnamed SQL expression such as a SQL function would raise a column targeting error if the query itself were using joinedload for an entity and was also being wrapped in a subquery by the joinedload eager loading process. .. change:: :tags: bug, orm, regression :tickets: 6092 Fixed regression where the :meth:`_orm.Query.filter_by` method would fail to locate the correct source entity if the :meth:`_orm.Query.join` method had been used targeting an entity without any kind of ON clause. .. change:: :tags: postgresql, usecase :tickets: 6982 Rename the column name used by a reflection query that used a reserved word in some postgresql compatible databases. .. change:: :tags: usecase, orm, dataclasses :tickets: 6100 Added support for the :class:`_orm.declared_attr` object to work in the context of dataclass fields. .. seealso:: :ref:`orm_declarative_dataclasses_mixin` .. change:: :tags: bug, sql, regression :tickets: 6101 Fixed issue where using a ``func`` that includes dotted packagenames would fail to be cacheable by the SQL caching system due to a Python list of names that needed to be a tuple. .. change:: :tags: bug, regression, orm :tickets: 6095 Fixed regression where the SQL compilation of a :class:`.Function` would not work correctly if the object had been "annotated", which is an internal memoization process used mostly by the ORM. In particular it could affect ORM lazy loads which make greater use of this feature in 1.4. .. change:: :tags: bug, sql, regression :tickets: 6097 Fixed regression in the :func:`_sql.case` construct, where the "dictionary" form of argument specification failed to work correctly if it were passed positionally, rather than as a "whens" keyword argument. .. change:: :tags: bug, orm :tickets: 6090 Fixed regression where the :class:`.ConcreteBase` would fail to map at all when a mapped column name overlapped with the discriminator column name, producing an assertion error. The use case here did not function correctly in 1.3 as the polymorphic union would produce a query that ignored the discriminator column entirely, while emitting duplicate column warnings. As 1.4's architecture cannot easily reproduce this essentially broken behavior of 1.3 at the ``select()`` level right now, the use case now raises an informative error message instructing the user to use the ``.ConcreteBase._concrete_discriminator_name`` attribute to resolve the conflict. To assist with this configuration, ``.ConcreteBase._concrete_discriminator_name`` may be placed on the base class only where it will be automatically used by subclasses; previously this was not the case. .. change:: :tags: bug, mypy :tickets: sqlalchemy/sqlalchemy2-stubs/2 Fixed issue in MyPy extension which crashed on detecting the type of a :class:`.Column` if the type were given with a module prefix like ``sa.Integer()``. .. changelog:: ``` ### 1.4.1 ``` :released: March 17, 2021 .. change:: :tags: bug, orm, regression :tickets: 6066 Fixed regression where producing a Core expression construct such as :func:`_sql.select` using ORM entities would eagerly configure the mappers, in an effort to maintain compatibility with the :class:`_orm.Query` object which necessarily does this to support many backref-related legacy cases. However, core :func:`_sql.select` constructs are also used in mapper configurations and such, and to that degree this eager configuration is more of an inconvenience, so eager configure has been disabled for the :func:`_sql.select` and other Core constructs in the absence of ORM loading types of functions such as :class:`_orm.Load`. The change maintains the behavior of :class:`_orm.Query` so that backwards compatibility is maintained. However, when using a :func:`_sql.select` in conjunction with ORM entities, a "backref" that isn't explicitly placed on one of the classes until mapper configure time won't be available unless :func:`_orm.configure_mappers` or the newer :func:`_orm.registry.configure` has been called elsewhere. Prefer using :paramref:`_orm.relationship.back_populates` for more explicit relationship configuration which does not have the eager configure requirement. .. change:: :tags: bug, mssql, regression :tickets: 6058 Fixed regression where a new setinputsizes() API that's available for pyodbc was enabled, which is apparently incompatible with pyodbc's fast_executemany() mode in the absence of more accurate typing information, which as of yet is not fully implemented or tested. The pyodbc dialect and connector has been modified so that setinputsizes() is not used at all unless the parameter ``use_setinputsizes`` is passed to the dialect, e.g. via :func:`_sa.create_engine`, at which point its behavior can be customized using the :meth:`.DialectEvents.do_setinputsizes` hook. .. seealso:: :ref:`mssql_pyodbc_setinputsizes` .. change:: :tags: bug, orm, regression :tickets: 6055 Fixed a critical regression in the relationship lazy loader where the SQL criteria used to fetch a related many-to-one object could go stale in relation to other memoized structures within the loader if the mapper had configuration changes, such as can occur when mappers are late configured or configured on demand, producing a comparison to None and returning no object. Huge thanks to Alan Hamlett for their help tracking this down late into the night. .. change:: :tags: bug, regression :tickets: 6068 Added back ``items`` and ``values`` to ``ColumnCollection`` class. The regression was introduced while adding support for duplicate columns in from clauses and selectable in ticket 4753. .. change:: :tags: bug, engine, regression :tickets: 6074 The Python ``namedtuple()`` has the behavior such that the names ``count`` and ``index`` will be served as tuple values if the named tuple includes those names; if they are absent, then their behavior as methods of ``collections.abc.Sequence`` is maintained. Therefore the :class:`_result.Row` and :class:`_result.LegacyRow` classes have been fixed so that they work in this same way, maintaining the expected behavior for database rows that have columns named "index" or "count". .. change:: :tags: bug, orm, regression :tickets: 6076 Fixed regression where the :meth:`_orm.Query.exists` method would fail to create an expression if the entity list of the :class:`_orm.Query` were an arbitrary SQL column expression. .. change:: :tags: bug, orm, regression :tickets: 6052 Fixed regression where calling upon :meth:`_orm.Query.count` in conjunction with a loader option such as :func:`_orm.joinedload` would fail to ignore the loader option. This is a behavior that has always been very specific to the :meth:`_orm.Query.count` method; an error is normally raised if a given :class:`_orm.Query` has options that don't apply to what it is returning. .. change:: :tags: bug, orm, declarative, regression :tickets: 6054 Fixed bug where user-mapped classes that contained an attribute named "registry" would cause conflicts with the new registry-based mapping system when using :class:`.DeclarativeMeta`. While the attribute remains something that can be set explicitly on a declarative base to be consumed by the metaclass, once located it is placed under a private class variable so it does not conflict with future subclasses that use the same name for other purposes. .. change:: :tags: bug, orm, regression :tickets: 6067 Fixed regression in :meth:`_orm.Session.identity_key`, including that the method and related methods were not covered by any unit test as well as that the method contained a typo preventing it from functioning correctly. .. changelog:: ``` ### 1.4.0 ``` :released: March 15, 2021 .. change:: :tags: bug, mssql :tickets: 5919 Fix a reflection error for MSSQL 2005 introduced by the reflection of filtered indexes. .. change:: :tags: feature, mypy :tickets: 4609 Rudimentary and experimental support for Mypy has been added in the form of a new plugin, which itself depends on new typing stubs for SQLAlchemy. The plugin allows declarative mappings in their standard form to both be compatible with Mypy as well as to provide typing support for mapped classes and instances. .. seealso:: :ref:`mypy_toplevel` .. change:: :tags: bug, sql :tickets: 6016 Fixed bug where the "percent escaping" feature that occurs with dialects that use the "format" or "pyformat" bound parameter styles was not enabled for the :meth:`_sql.Operators.op` and :class:`_sql.custom_op` constructs, for custom operators that use percent signs. The percent sign will now be automatically doubled based on the paramstyle as necessary. .. change:: :tags: bug, regression, sql :tickets: 5979 Fixed regression where the "unsupported compilation error" for unknown datatypes would fail to raise correctly. .. change:: :tags: ext, usecase :tickets: 5942 Add new parameter :paramref:`_automap.AutomapBase.prepare.reflection_options` to allow passing of :meth:`_schema.MetaData.reflect` options like ``only`` or dialect-specific reflection options like ``oracle_resolve_synonyms``. .. change:: :tags: change, sql Altered the compilation for the :class:`.CTE` construct so that a string is returned representing the inner SELECT statement if the :class:`.CTE` is stringified directly, outside of the context of an enclosing SELECT; This is the same behavior of :meth:`_sql.FromClause.alias` and :meth:`_sql.Select.subquery`. Previously, a blank string would be returned as the CTE is normally placed above a SELECT after that SELECT has been generated, which is generally misleading when debugging. .. change:: :tags: bug, orm :tickets: 5981 Fixed regression where the :paramref:`_orm.relationship.query_class` parameter stopped being functional for "dynamic" relationships. The ``AppenderQuery`` remains dependent on the legacy :class:`_orm.Query` class; users are encouraged to migrate from the use of "dynamic" relationships to using :func:`_orm.with_parent` instead. .. change:: :tags: bug, orm, regression :tickets: 6003 Fixed regression where :meth:`_orm.Query.join` would produce no effect if the query itself as well as the join target were against a :class:`_schema.Table` object, rather than a mapped class. This was part of a more systemic issue where the legacy ORM query compiler would not be correctly used from a :class:`_orm.Query` if the statement produced had not ORM entities present within it. .. change:: :tags: bug, regression, sql :tickets: 6008 Fixed regression where usage of the standalone :func:`_sql.distinct()` used in the form of being directly SELECTed would fail to be locatable in the result set by column identity, which is how the ORM locates columns. While standalone :func:`_sql.distinct()` is not oriented towards being directly SELECTed (use :meth:`_sql.select.distinct` for a regular ``SELECT DISTINCT..``) , it was usable to a limited extent in this way previously (but wouldn't work in subqueries, for example). The column targeting for unary expressions such as "DISTINCT <col>" has been improved so that this case works again, and an additional improvement has been made so that usage of this form in a subquery at least generates valid SQL which was not the case previously. The change additionally enhances the ability to target elements in ``row._mapping`` based on SQL expression objects in ORM-enabled SELECT statements, including whether the statement was invoked by ``connection.execute()`` or ``session.execute()``. .. change:: :tags: bug, orm, asyncio :tickets: 5998 The API for :meth:`_asyncio.AsyncSession.delete` is now an awaitable; this method cascades along relationships which must be loaded in a similar manner as the :meth:`_asyncio.AsyncSession.merge` method. .. change:: :tags: usecase, postgresql, mysql, asyncio :tickets: 5967 Added an ``asyncio.Lock()`` within SQLAlchemy's emulated DBAPI cursor, local to the connection, for the asyncpg and aiomysql dialects for the scope of the ``cursor.execute()`` and ``cursor.executemany()`` methods. The rationale is to prevent failures and corruption for the case where the connection is used in multiple awaitables at once. While this use case can also occur with threaded code and non-asyncio dialects, we anticipate this kind of use will be more common under asyncio, as the asyncio API is encouraging of such use. It's definitely better to use a distinct connection per concurrent awaitable however as concurrency will not be achieved otherwise. For the asyncpg dialect, this is so that the space between the call to ``prepare()`` and ``fetch()`` is prevented from allowing concurrent executions on the connection from causing interface error exceptions, as well as preventing race conditions when starting a new transaction. Other PostgreSQL DBAPIs are threadsafe at the connection level so this intends to provide a similar behavior, outside the realm of server side cursors. For the aiomysql dialect, the mutex will provide safety such that the statement execution and the result set fetch, which are two distinct steps at the connection level, won't get corrupted by concurrent executions on the same connection. .. change:: :tags: bug, engine :tickets: 6002 Improved engine logging to note ROLLBACK and COMMIT which is logged while the DBAPI driver is in AUTOCOMMIT mode. These ROLLBACK/COMMIT are library level and do not have any effect when AUTOCOMMIT is in effect, however it's still worthwhile to log as these indicate where SQLAlchemy sees the "transaction" demarcation. .. change:: :tags: bug, regression, engine :tickets: 6004 Fixed a regression where the "reset agent" of the connection pool wasn't really being utilized by the :class:`_engine.Connection` when it were closed, and also leading to a double-rollback scenario that was somewhat wasteful. The newer architecture of the engine has been updated so that the connection pool "reset-on-return" logic will be skipped when the :class:`_engine.Connection` explicitly closes out the transaction before returning the pool to the connection. .. change:: :tags: bug, schema :tickets: 5953 Deprecated all schema-level ``.copy()`` methods and renamed to ``_copy()``. These are not standard Python "copy()" methods as they typically rely upon being instantiated within particular contexts which are passed to the method as optional keyword arguments. The :meth:`_schema.Table.tometadata` method is the public API that provides copying for :class:`_schema.Table` objects. .. change:: :tags: bug, ext :tickets: 6020 The ``sqlalchemy.ext.mutable`` extension now tracks the "parents" collection using the :class:`.InstanceState` associated with objects, rather than the object itself. The latter approach required that the object be hashable so that it can be inside of a ``WeakKeyDictionary``, which goes against the behavioral contract of the ORM overall which is that ORM mapped objects do not need to provide any particular kind of ``__hash__()`` method and that unhashable objects are supported. .. change:: :tags: bug, orm :tickets: 5984 The unit of work process now turns off all "lazy='raise'" behavior altogether when a flush is proceeding. While there are areas where the UOW is sometimes loading things that aren't ultimately needed, the lazy="raise" strategy is not helpful here as the user often does not have much control or visibility into the flush process. .. changelog:: ``` ### 1.4.0b3 ``` :released: March 15, 2021 :released: February 15, 2021 .. change:: :tags: bug, orm :tickets: 5933 Fixed issue in new 1.4/2.0 style ORM queries where a statement-level label style would not be preserved in the keys used by result rows; this has been applied to all combinations of Core/ORM columns / session vs. connection etc. so that the linkage from statement to result row is the same in all cases. As part of this change, the labeling of column expressions in rows has been improved to retain the original name of the ORM attribute even if used in a subquery. .. change:: :tags: bug, sql :tickets: 5924 Fixed bug where the "cartesian product" assertion was not correctly accommodating for joins between tables that relied upon the use of LATERAL to connect from a subquery to another subquery in the enclosing context. .. change:: :tags: bug, sql :tickets: 5934 Fixed 1.4 regression where the :meth:`_functions.Function.in_` method was not covered by tests and failed to function properly in all cases. .. change:: :tags: bug, engine, postgresql :tickets: 5941 Continued with the improvement made as part of :ticket:`5653` to further support bound parameter names, including those generated against column names, for names that include colons, parenthesis, and question marks, as well as improved test support, so that bound parameter names even if they are auto-derived from column names should have no problem including for parenthesis in psycopg2's "pyformat" style. As part of this change, the format used by the asyncpg DBAPI adapter (which is local to SQLAlchemy's asyncpg dialect) has been changed from using "qmark" paramstyle to "format", as there is a standard and internally supported SQL string escaping style for names that use percent signs with "format" style (i.e. to double percent signs), as opposed to names that use question marks with "qmark" style (where an escaping system is not defined by pep-249 or Python). .. seealso:: :ref:`change_5941` .. change:: :tags: sql, usecase, postgresql, sqlite :tickets: 5939 Enhance ``set_`` keyword of :class:`.OnConflictDoUpdate` to accept a :class:`.ColumnCollection`, such as the ``.c.`` collection from a :class:`Selectable`, or the ``.excluded`` contextual object. .. change:: :tags: feature, orm The ORM used in :term:`2.0 style` can now return ORM objects from the rows returned by an UPDATE..RETURNING or INSERT..RETURNING statement, by supplying the construct to :meth:`_sql.Select.from_statement` in an ORM context. .. seealso:: :ref:`orm_dml_returning_objects` .. change:: :tags: bug, sql :tickets: 5935 Fixed regression where use of an arbitrary iterable with the :func:`_sql.select` function was not working, outside of plain lists. The forwards/backwards compatibility logic here now checks for a wider range of incoming "iterable" types including that a ``.c`` collection from a selectable can be passed directly. Pull request compliments of Oliver Rice. .. changelog:: ``` ### 1.4.0b2 ``` :released: March 15, 2021 :released: February 3, 2021 .. change:: :tags: usecase, sql :tickets: 5695 Multiple calls to "returning", e.g. :meth:`_sql.Insert.returning`, may now be chained to add new columns to the RETURNING clause. .. change:: :tags: bug, asyncio :tickets: 5615 Adjusted the greenlet integration, which provides support for Python asyncio in SQLAlchemy, to accommodate for the handling of Python ``contextvars`` (introduced in Python 3.7) for ``greenlet`` versions greater than 0.4.17. Greenlet version 0.4.17 added automatic handling of contextvars in a backwards-incompatible way; we've coordinated with the greenlet authors to add a preferred API for this in versions subsequent to 0.4.17 which is now supported by SQLAlchemy's greenlet integration. For greenlet versions prior to 0.4.17 no behavioral change is needed, version 0.4.17 itself is blocked from the dependencies. .. change:: :tags: bug, engine, sqlite :tickets: 5845 Fixed bug in the 2.0 "future" version of :class:`.Engine` where emitting SQL during the :meth:`.EngineEvents.begin` event hook would cause a re-entrant (recursive) condition due to autobegin, affecting among other things the recipe documented for SQLite to allow for savepoints and serializable isolation support. .. change:: :tags: bug, orm, regression :tickets: 5845 Fixed issue in new :class:`_orm.Session` similar to that of the :class:`_engine.Connection` where the new "autobegin" logic could be tripped into a re-entrant (recursive) state if SQL were executed within the :meth:`.SessionEvents.after_transaction_create` event hook. .. change:: :tags: sql :tickets: 4757 Replace :meth:`_orm.Query.with_labels` and :meth:`_sql.GenerativeSelect.apply_labels` with explicit getters and setters :meth:`_sql.GenerativeSelect.get_label_style` and :meth:`_sql.GenerativeSelect.set_label_style` to accommodate the three supported label styles: :data:`_sql.LABEL_STYLE_DISAMBIGUATE_ONLY`, :data:`_sql.LABEL_STYLE_TABLENAME_PLUS_COL`, and :data:`_sql.LABEL_STYLE_NONE`. In addition, for Core and "future style" ORM queries, ``LABEL_STYLE_DISAMBIGUATE_ONLY`` is now the default label style. This style differs from the existing "no labels" style in that labeling is applied in the case of column name conflicts; with ``LABEL_STYLE_NONE``, a duplicate column name is not accessible via name in any case. For cases where labeling is significant, namely that the ``.c`` collection of a subquery is able to refer to all columns unambiguously, the behavior of ``LABEL_STYLE_DISAMBIGUATE_ONLY`` is now sufficient for all SQLAlchemy features across Core and ORM which involve this behavior. Result set rows since SQLAlchemy 1.0 are usually aligned with column constructs positionally. For legacy ORM queries using :class:`_query.Query`, the table-plus-column names labeling style applied by ``LABEL_STYLE_TABLENAME_PLUS_COL`` continues to be used so that existing test suites and logging facilities see no change in behavior by default. .. change:: :tags: bug, orm, unitofwork :tickets: 5735 Improved the unit of work topological sorting system such that the toplogical sort is now deterministic based on the sorting of the input set, which itself is now sorted at the level of mappers, so that the same inputs of affected mappers should produce the same output every time, among mappers / tables that don't have any dependency on each other. This further reduces the chance of deadlocks as can be observed in a flush that UPDATEs among multiple, unrelated tables such that row locks are generated. .. change:: :tags: changed, orm :tickets: 5897 Mapper "configuration", which occurs within the :func:`_orm.configure_mappers` function, is now organized to be on a per-registry basis. This allows for example the mappers within a certain declarative base to be configured, but not those of another base that is also present in memory. The goal is to provide a means of reducing application startup time by only running the "configure" process for sets of mappers that are needed. This also adds the :meth:`_orm.registry.configure` method that will run configure for the mappers local in a particular registry only. .. change:: :tags: bug, orm :tickets: 5702 Fixed regression where the :paramref:`.Bundle.single_entity` flag would take effect for a :class:`.Bundle` even though it were not set. Additionally, this flag is legacy as it only makes sense for the :class:`_orm.Query` object and not 2.0 style execution. a deprecation warning is emitted when used with new-style execution. .. change:: :tags: bug, sql :tickets: 5858 Fixed issue in new :meth:`_sql.Select.join` method where chaining from the current JOIN wasn't looking at the right state, causing an expression like "FROM a JOIN b <onclause>, b JOIN c <onclause>" rather than "FROM a JOIN b <onclause> JOIN c <onclause>". .. change:: :tags: usecase, sql Added :meth:`_sql.Select.outerjoin_from` method to complement :meth:`_sql.Select.join_from`. .. change:: :tags: usecase, sql :tickets: 5888 Adjusted the "literal_binds" feature of :class:`_sql.Compiler` to render NULL for a bound parameter that has ``None`` as the value, either explicitly passed or omitted. The previous error message "bind parameter without a renderable value" is removed, and a missing or ``None`` value will now render NULL in all cases. Previously, rendering of NULL was starting to happen for DML statements due to internal refactorings, but was not explicitly part of test coverage, which it now is. While no error is raised, when the context is within that of a column comparison, and the operator is not "IS"/"IS NOT", a warning is emitted that this is not generally useful from a SQL perspective. .. change:: :tags: bug, orm :tickets: 5750 Fixed regression where creating an :class:`_orm.aliased` construct against a plain selectable and including a name would raise an assertionerror. .. change:: :tags: bug, mssql, mysql, datatypes :tickets: 5788 :versions: 1.4.0b2 Decimal accuracy and behavior has been improved when extracting floating point and/or decimal values from JSON strings using the :meth:`_sql.sqltypes.JSON.Comparator.as_float` method, when the numeric value inside of the JSON string has many significant digits; previously, MySQL backends would truncate values with many significant digits and SQL Server backends would raise an exception due to a DECIMAL cast with insufficient significant digits. Both backends now use a FLOAT-compatible approach that does not hardcode significant digits for floating point values. For precision numerics, a new method :meth:`_sql.sqltypes.JSON.Comparator.as_numeric` has been added which accepts arguments for precision and scale, and will return values as Python ``Decimal`` objects with no floating point conversion assuming the DBAPI supports it (all but pysqlite). .. change:: :tags: feature, orm, declarative :tickets: 5745 Added an alternate resolution scheme to Declarative that will extract the SQLAlchemy column or mapped property from the "metadata" dictionary of a dataclasses.Field object. This allows full declarative mappings to be combined with dataclass fields. .. seealso:: :ref:`orm_declarative_dataclasses_declarative_table` .. change:: :tags: bug, sql :tickets: 5754 Deprecation warnings are emitted under "SQLALCHEMY_WARN_20" mode when passing a plain string to :meth:`_orm.Session.execute`. .. change:: :tags: bug, sql, orm :tickets: 5760, 5763, 5765, 5768, 5770 A wide variety of fixes to the "lambda SQL" feature introduced at :ref:`engine_lambda_caching` have been implemented based on user feedba
pyup-bot commented 3 years ago

Closing this in favor of #847