dswah / pyGAM

[HELP REQUESTED] Generalized Additive Models in Python
https://pygam.readthedocs.io
Apache License 2.0
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Fix error with data ownership in cholesky #288

Open craymichael opened 3 years ago

craymichael commented 3 years ago

Require that the fill-reducing permutation P of Cholesky factorizer owns its data before use. Fixes #271

This sets the OWNDATA flag of its data to True - in traceback it can be seen that col (line 102 of scipy/sparse/_index.py), which is derived from p, has this flag set to false. This creates a copy of the data if necessary (which apparently it wasn't in previous versions?)

Someone should give this patch a shot on their machine as well.

codecov[bot] commented 3 years ago

Codecov Report

Merging #288 (5e3f2e1) into master (b57b4cf) will increase coverage by 0.03%. The diff coverage is 0.00%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #288      +/-   ##
==========================================
+ Coverage   95.21%   95.25%   +0.03%     
==========================================
  Files          22       22              
  Lines        3178     3223      +45     
==========================================
+ Hits         3026     3070      +44     
- Misses        152      153       +1     
Impacted Files Coverage Δ
pygam/utils.py 87.46% <0.00%> (-0.27%) :arrow_down:
pygam/tests/test_terms.py 100.00% <0.00%> (ø)
pygam/pygam.py 94.80% <0.00%> (+<0.01%) :arrow_up:
pygam/tests/test_utils.py 96.55% <0.00%> (+0.04%) :arrow_up:
pygam/callbacks.py 95.23% <0.00%> (+0.07%) :arrow_up:
pygam/terms.py 94.60% <0.00%> (+0.19%) :arrow_up:
pygam/distributions.py 88.88% <0.00%> (+0.48%) :arrow_up:
pygam/tests/conftest.py 98.21% <0.00%> (+0.65%) :arrow_up:

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