drfuka
commented
1 year ago Howdy Mauricio, I keep meaning to post this and/or send it to David, so thanks for bringing it up. These are errors that come from a dependency on prior versions of MPI. For V2+, you can update a few lines in 4 files to bring TauDEM into V2+ compliance. This was something that deprecated in V2 but still supported for legacy, but removed completely in V3.
You need to update files that include the following from: MPI_Type_create_struct calls to MPI_Type_create_struct, a simple find/replace, and: MPI_Type_extent(MPI_LONG, &extent) to MPI_Aint lb;MPI_Type_get_extent(MPI_LONG, &lb, &extent) the second of which is less simple depending on your editor.
If you are *nix friendly:
In your "terminal" run the code per the
---In Terminal---
cd ~/src/ # Set your directory to your home directory
git clone https://github.com/dtarb/TauDEM.git
mkdir ~/src/TauDEM/bin
cd ~/src/TauDEM/src
make
NOOOOOOO AAAAAAAGGGGGGGHHHHHHH WHAT HAPPENED ROJA?!?!?!
https://www.mpich.org/static/docs/v3.2/www3/MPI_Type_struct.html
Here, we have found a few updates that need to be made
to the code for updating
https://www.mpich.org/static/docs/v3.2/www3/MPI_Type_struct.html
grep MPI_Type_extent *
grep MPI_Type_struct *
sed -i -e 's/MPI_Type_struct/MPI_Type_create_struct/g' linklib.h
yes, this next line is very small font, but it is one line so...
sed -i -e 's/MPI_Type_extent(MPI_LONG, \&extent)/MPI_Aint lb\;MPI_Type_get_extent(MPI_LONG, \&lb, \&extent)/g' linklib.h
Now let's try make again!
make
On Tue, Mar 21, 2023 at 9:39 AM Maurício Vancine @.***> wrote:
Dear,
I'm trying to compile on Ubuntu, but I had this error.
Could you help?
Thank you.
Error:
In file included from /home/mude/Downloads/TauDEM/src/streamnet.cpp:56: /home/mude/Downloads/TauDEM/src/linklib.h: In function ‘bool sendLink(int32_t, int)’: /home/mude/Downloads/TauDEM/src/linklib.h:281:9: error: ‘MPI_Type_extent’ was not declared in this scope; did you mean ‘MPI_Type_get_extent’? 281 | MPI_Type_extent(MPI_LONG, &extent); | ^
~~~~~~ | MPI_Type_get_extent /home/mude/Downloads/TauDEM/src/linklib.h:286:9: error: ‘MPI_Type_struct’ was not declared in this scope; did you mean ‘MPI_Type_size_x’? 286 | MPI_Type_struct(2,blockcounts,offsets,oldtypes,&PointType); | ^~~~~~~ | MPI_Type_size_x /home/mude/Downloads/TauDEM/src/linklib.h: In function ‘bool recvLink(int)’: /home/mude/Downloads/TauDEM/src/linklib.h:349:9: error: ‘MPI_Type_extent’ was not declared in this scope; did you mean ‘MPI_Type_get_extent’? 349 | MPI_Type_extent(MPI_LONG, &extent); | ^~~~~~~ | MPI_Type_get_extent /home/mude/Downloads/TauDEM/src/linklib.h:354:9: error: ‘MPI_Type_struct’ was not declared in this scope; did you mean ‘MPI_Type_size_x’? 354 | MPI_Type_struct(2,blockcounts,offsets,oldtypes,&PointType); | ^~~~~~~ | MPI_Type_size_x /home/mude/Downloads/TauDEM/src/streamnet.cpp: In function ‘int reachshape(long int, float, float, float, double, double, long int, tiffIO&)’: /home/mude/Downloads/TauDEM/src/streamnet.cpp:347:24: warning: ignoring return value of ‘OGRErr OGR_L_CreateFeature(OGRLayerH, OGRFeatureH)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 347 | OGR_L_CreateFeature( hLayer1, hFeature1 ); //adding feature |~~~~~^~~~~~~~— Reply to this email directly, view it on GitHub https://github.com/dtarb/TauDEM/issues/249, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAXH4LP2G2CCGU3BEYJWATDW5HDT5ANCNFSM6AAAAAAWCT4EQE . You are receiving this because you are subscribed to this thread.Message ID: @.***>
mauriciovancine
Dear,
I'm trying to compile on Ubuntu, but I had this error.
Could you help?
Thank you.
Error:
In file included from /home/mude/Downloads/TauDEM/src/streamnet.cpp:56: /home/mude/Downloads/TauDEM/src/linklib.h: In function ‘bool sendLink(int32_t, int)’: /home/mude/Downloads/TauDEM/src/linklib.h:281:9: error: ‘MPI_Type_extent’ was not declared in this scope; did you mean ‘MPI_Type_get_extent’? 281 | MPI_Type_extent(MPI_LONG, &extent); | ^
~~~~~~ | MPI_Type_get_extent /home/mude/Downloads/TauDEM/src/linklib.h:286:9: error: ‘MPI_Type_struct’ was not declared in this scope; did you mean ‘MPI_Type_size_x’? 286 | MPI_Type_struct(2,blockcounts,offsets,oldtypes,&PointType); | ^~~~~~~ | MPI_Type_size_x /home/mude/Downloads/TauDEM/src/linklib.h: In function ‘bool recvLink(int)’: /home/mude/Downloads/TauDEM/src/linklib.h:349:9: error: ‘MPI_Type_extent’ was not declared in this scope; did you mean ‘MPI_Type_get_extent’? 349 | MPI_Type_extent(MPI_LONG, &extent); | ^~~~~~~ | MPI_Type_get_extent /home/mude/Downloads/TauDEM/src/linklib.h:354:9: error: ‘MPI_Type_struct’ was not declared in this scope; did you mean ‘MPI_Type_size_x’? 354 | MPI_Type_struct(2,blockcounts,offsets,oldtypes,&PointType); | ^~~~~~~ | MPI_Type_size_x /home/mude/Downloads/TauDEM/src/streamnet.cpp: In function ‘int reachshape(long int, float, float, float, double, double, long int, tiffIO&)’: /home/mude/Downloads/TauDEM/src/streamnet.cpp:347:24: warning: ignoring return value of ‘OGRErr OGR_L_CreateFeature(OGRLayerH, OGRFeatureH)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 347 | OGR_L_CreateFeature( hLayer1, hFeature1 ); //adding feature |~~~~~^~~~~~~~