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dtsoucas / DWLS

Gene expression deconvolution using dampened weighted least squares
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Bioconductor package install with newer R bug #6

Open nbroguiere opened 3 years ago

nbroguiere commented 3 years ago

When following the tutorial, when calling source("../Deconvolution_functions"), it gave the error message:

"Loading required package: MAST Error: With R version 3.5 or greater, install Bioconductor packages using BiocManager; see https://bioconductor.org/install"

Which was solved by replacing: "source("https://bioconductor.org/biocLite.R") biocLite("MAST")"

in the source by: "BiocManager::install("MAST")"

It might make sense to do it this way in the first place in your package? Thanks