du-lab / metabofood-sandbox

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issue #3_get reactome pathway for FDC nutrients #3

Open du-lab opened 2 months ago

du-lab commented 2 months ago

Use the scripts from #1 to get reactome pathway for FDC nutrients and provide the following:

tt-dong866 commented 2 months ago

the number of unique FDC nutrients and the table of these nutrients. 477 nutrient.csv

the number of unique FDC nutrients that have inchikey and the table of these nutrients. 103 InChiKey_id.csv

the number of unique FDC nutrients that have HMDB ID and the table of these nutrients. 82 nutrient_inchikey_hmdb_id.csv

table of HMDB ID to KEGG ID mapping nutrient_hmdb_kegg_mapping.csv

the table of the pathways nutrient_inchikey_hmdb_kegg_pathway.csv