duartegroup / autodE

automated reaction profile generation
https://duartegroup.github.io/autodE/
MIT License
165 stars 51 forks source link

Add Dewar-Healy-Stewart method #249

Closed shoubhikraj closed 1 year ago

shoubhikraj commented 1 year ago

Adds the DHS method for finding transition state guesses.


Checklist

codecov[bot] commented 1 year ago

Codecov Report

Merging #249 (c003a59) into v1.4.0 (1f42142) will decrease coverage by 6.82%. The diff coverage is 34.68%.

:exclamation: Current head c003a59 differs from pull request most recent head 798857f. Consider uploading reports for the commit 798857f to get more accurate results

@@            Coverage Diff             @@
##           v1.4.0     #249      +/-   ##
==========================================
- Coverage   96.86%   90.04%   -6.82%     
==========================================
  Files         195      201       +6     
  Lines       20403    20970     +567     
==========================================
- Hits        19763    18883     -880     
- Misses        640     2087    +1447     
Flag Coverage Δ
unittests 90.04% <34.68%> (-6.82%) :arrow_down:

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
autode/opt/optimisers/gdiis.py 0.00% <0.00%> (ø)
autode/bracket/dhs.py 18.34% <18.34%> (ø)
autode/bracket/imagepair.py 48.06% <48.06%> (ø)
tests/test_bracket/test_imgpair.py 49.52% <49.52%> (ø)
tests/test_bracket/test_dhs.py 56.00% <56.00%> (ø)
autode/__init__.py 100.00% <100.00%> (ø)
autode/bracket/__init__.py 100.00% <100.00%> (ø)
autode/config.py 100.00% <100.00%> (ø)
tests/test_reaction_with_complexes.py 32.00% <0.00%> (-68.00%) :arrow_down:
autode/opt/optimisers/prfo.py 30.00% <0.00%> (-67.50%) :arrow_down:
... and 68 more

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shoubhikraj commented 1 year ago

Closing this temporarily as there are many optimiser issues