duartegroup / autodE

automated reaction profile generation
https://duartegroup.github.io/autodE/
MIT License
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Diffrence in frequencies from ORCA and autode #298

Closed tkpiskorz closed 11 months ago

tkpiskorz commented 1 year ago

Describe the bug The frequencies printed from Molecule.frequencies are different from ORCA output file generated by autodE.

To Reproduce

orca = ade.methods.ORCA()
mol = ade.Molecule(smiles='CCCC')
mol.optimise(method=orca, keywords=['wB97X-D3', 'def2-TZVPP', 'tightOPT', 'freq'])
print(mol.frequencies)

Expected behavior The frequencies from python script using autodE should be the same as in ORCA output generated by the same script.

Environment

Additional context The above example is the minimalistic, the difference is small (5-10 cm-1). I observed it for metal complexes, where with autodE I get negative frequencies (-30 cm-1), while in ORCA there are all positive. I noticed that the difference is smaller with PBE0/def2-SVP.

t-young31 commented 1 year ago

Hey @tkpiskorz

Can't say I'm too surprised with this. Neither the opt or normal mode analysis is fully deterministic. ORCA also has access to higher precision quantities. What's the ORCA<->Gaussian difference like?

Also, frequencies at DFT are wrong by ~50 cm-1 so 🤷🏼 (ref. e.g. https://arxiv.org/pdf/2302.04448.pdf)

tkpiskorz commented 1 year ago

Thanks for quick answer. I am using frequencies to determine bond force constants for MM. The small diffrences are not that important. However, when it changes sign to negative, I am worried that negative frequencies will result in negative bond force constants. Maybe I should not be that worried (as they will contribute only a little).

[edit] :sorry did not mean to close it

t-young31 commented 1 year ago

However, when it changes sign to negative, I am worried that negative frequencies will result in negative bond force constants

Oh yes – that would be very bad!

What's the reason for not computing the force constants numerically and so avoiding horrible coupling(?)

t-young31 commented 11 months ago

did you get any further on this @tkpiskorz ? I'm inclined to say this isn't a bug..

tkpiskorz commented 11 months ago

No, I have not managed that, but thanks!