Closed inoue0426 closed 2 years ago
Hi,
Thank you very much for your interest in our package.
It seems like your input matrix is in form samples genes. The required input for scISR is matrix of genes samples. scISR has preprocessing step, so the number of rows/genes would be less in the output (in this case, samples). If you don't want scISR to filter anything, you can set preprocessing=F
to turn the preprocessing step off.
Let's me know if you have any other problem.
Hi @duct317 Thank you for your advice! I completely misunderstood it. I'll try, thanks!
I tried to use this library for the public dataset, but it returned a different dimension. Do you know why this occurs?
Dataset
https://www-ncbi-nlm-nih-gov.ezp3.lib.umn.edu/geo/query/acc.cgi?acc=GSE87544 GSE87544_Merged_17samples_14437cells_count.txt.gz
Environment
Code and output
14437 ・ 23284
14419 ・ 23284