Create two new repositories for each template, starter and starter-with-secrets
Change initialize scripts to leverage new repository so users can easily open PRs back to their configuration if they want to
Link repositories back to this configuration via git submodules
Change existing scripts to abstract away any submodule commands
Notes:
For CI, use Claude or something similar to help apply patches across repositories for now
We probably want to refactor secrets into a dependency that is enabled/disable, not two repositories
We can continue to use sed to replace files, mainly replacing instances of starter with starter-with-secrets, potentially supporting a blacklist of files not to automatically edit
starterandstarter-with-secretsNotes:
starterwithstarter-with-secrets, potentially supporting a blacklist of files not to automatically edit