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dutchconnectomelab / CATO

Toolbox for structural and functional brain connectivity reconstruction.
http://www.dutchconnectomelab.nl/CATO/
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Add functional preprocessing script utilizing ICA+FIX #22

Open SiemondeLange opened 2 years ago

SiemondeLange commented 2 years ago

Add a default preprocessing script that uses FSL to apply ICA+FIX for rs-fMRI preprocessing.

SiemondeLange commented 1 year ago

The current example preprocessing script for ICA+FIX provides the expected output files. However, the correct implementation of the ICA+FIX has not been validated as this requires a dataset-specific trainings file (e.g. Standard.RData).

I have no reference dataset with such trainings-file at the moment and will postpone the implementation of an example ICA+FIX preprocessing file to a later CATO version. This will ensure proper testing of this feature and adequate documentation for users about this dataset-specific processing step.

SiemondeLange commented 1 year ago

It might be a good idea to include this preprocessing step as an "add-on". That might be appropriate considering that it is an extension of CATO, uses additional external software and additional parameters.