Problems with base calling in fast5 and fastq format

dvera / albacore

Dockerfile for the Albacore basecaller from Oxford Nanopore

GNU General Public License v3.0

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Problems with base calling in fast5 and fastq format #3

Open lalalagartija opened 6 years ago

lalalagartija commented 6 years ago

Hi,

I did the base calling with the option -o fastq,fast5 and --files_per_batch_folder 0 I did got all the fast5 files sorted in the workspace directory but I can't find the fastq file. Where is it supposed to end ? Can albacore convert fast5 files to fastq ?

Thank you very much,