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dvera / albacore

Dockerfile for the Albacore basecaller from Oxford Nanopore
GNU General Public License v3.0
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read_fast5_basecaller.py", line 477, in <module> config_override = parse_config_override(unknown_args) #7

Open JefferFoo opened 5 months ago

JefferFoo commented 5 months ago 
docker run docker.io/robegan21/albacore read_fast5_basecaller.py read_fast5_basecaller.py -f FLO-PRO002 -k SQK-LSK109 -t 8 -i E:/Documents/Rwork/Data/Nanopore/results/00_ref_and_rawdata/PAQ84345_pass_barcode11_d1ae855a_f9dd6d43_0.fast5 -s E:/Documents/Rwork/Data/Nanopore/results/00_ref_and_rawdata/ -o fastq
Traceback (most recent call last):
  File "/usr/bin/read_fast5_basecaller.py", line 477, in <module>
    config_override = parse_config_override(unknown_args)
  File "/usr/lib/python3/dist-packages/albacore/config_utils.py", line 107, in parse_config_override
    raise Exception('Unknown command-line argument ' + option)
Exception: Unknown command-line argument read_fast5_basecaller.py

I'm running albacore on docker desktop,and meet such a problem.