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dviraran / SingleR

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
GNU General Public License v3.0
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CreateSinglerObject logical subscript too long #109

Open jingchen-0927 opened 4 years ago

jingchen-0927 commented 4 years ago

singler = CreateSinglerObject(expression_matrix, annot = NULL, "test", min.genes = 0,technology = "10X", species = "Mouse",citation = "",normalize.gene.length = F, variable.genes = "de",fine.tune = T, do.signatures = T, clusters = Idents(immune.combined), do.main.types = T,reduce.file.size = T, numCores = SingleR.numCores)

Error in sc_data[, is.element(clusters, levels(clusters)[i])] (subscript) logical subscript too long In addition: Warning message: executing %dopar% sequentially: no parallel backend registered

Could you help to solve the problem?

dviraran commented 4 years ago

Looks like a parallelization issue. Are you using windows?