Open jingchen-0927 opened 4 years ago
singler = CreateSinglerObject(expression_matrix, annot = NULL, "test", min.genes = 0,technology = "10X", species = "Mouse",citation = "",normalize.gene.length = F, variable.genes = "de",fine.tune = T, do.signatures = T, clusters = Idents(immune.combined), do.main.types = T,reduce.file.size = T, numCores = SingleR.numCores)
Error in sc_data[, is.element(clusters, levels(clusters)[i])] (subscript) logical subscript too long In addition: Warning message: executing %dopar% sequentially: no parallel backend registered
Could you help to solve the problem?
Looks like a parallelization issue. Are you using windows?
singler = CreateSinglerObject(expression_matrix, annot = NULL, "test", min.genes = 0,technology = "10X", species = "Mouse",citation = "",normalize.gene.length = F, variable.genes = "de",fine.tune = T, do.signatures = T, clusters = Idents(immune.combined), do.main.types = T,reduce.file.size = T, numCores = SingleR.numCores)
Error in sc_data[, is.element(clusters, levels(clusters)[i])] (subscript) logical subscript too long In addition: Warning message: executing %dopar% sequentially: no parallel backend registered
Could you help to solve the problem?