x <- readRDS("matrix.Rds")
out <- CreateSinglerObject(
counts=x,
project.name="x",
min.genes=200,
ref.list=list(hpca=hpca,bpe=blueprint_encode),
fine.tune=FALSE,
do.main.types=TRUE,
numCores=6)
I get the following error:
[1] "Dimensions of counts data: 55139x648"
[1] "Annotating data with HPCA..."
[1] "Variable genes method: de"
[1] "Number of DE genes:0"
[1] "Number of cells: 648"
Error in if (xor(((x[n] - mean(x)) < (mean(x) - x[1])), opposite)) { :
argument is of length zero
I am attaching the data matrix as an Rds object. It is zipped because GitHub complains when it ends in Rds.
matrix.zip
I am running SingleR as shown below.
I get the following error:
I am attaching the data matrix as an Rds object. It is zipped because GitHub complains when it ends in Rds. matrix.zip
Running
SingleR 1.0.1
inR 3.6.0
.