dviraran / SingleR

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
GNU General Public License v3.0
260 stars 95 forks source link

can not download sqlite3 file #118

Closed BioLaoXu closed 4 years ago

BioLaoXu commented 4 years ago

Hi,when i read the SingleR html document, i mention that SingleR is a powerful tool for scRNA sequencing cell type classify,but there is some problems for me ,so could anyone can solve this.

my code:

library(SingleR) hpca.se <- HumanPrimaryCellAtlasData()

error information:

Error in curl::curl_fetch_memory(url, handle = handle) : Timeout was reached: [experimenthub.bioconductor.org] Connection timed out after 10001 milliseconds

and there will have another error: Error in .local(x, i, j, ...) : 'i' must be length 1

i have try to reset some options in options function,eg:options(timeout =50000 ),but it keeps reporting same errors

dviraran commented 4 years ago

Please repost this issue in https://github.com/LTLA/SingleR

Thanks, Dvir