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dviraran / SingleR

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
GNU General Public License v3.0
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About how to construct the trainning data set for building the annotation database of other species #127

Open BioAIEvolu opened 4 years ago

BioAIEvolu commented 4 years ago

About how to construct the trainning data set for building the annotation database of other specie

The purpose

  1. I want to annotate the cell type of other species, which aren't human or mouse.
  2. The introduction of SingleR show two useful function: Train()和classify()

Problem

However, I can't figure out the solution to construct the correct data set. May you show the process of construct the data set for train()

thank you :)

BioAIEvolu commented 4 years ago

I find another function :SingleR() has two parameter: ref and label.The two parameter can be used for the same purpose,too.

So , How can I construct the the label data?