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dviraran / SingleR

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
GNU General Public License v3.0
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Function"CreateSinglerSeuratObject" was not found! Where's the way out? #130

Open chuanyang-learner opened 4 years ago

chuanyang-learner commented 4 years ago

singler = CreateSinglerSeuratObject(counts, annot = ann, "pbmc", min.genes = 0,

  • species = "Human", citation = "",
  • ref.list = list(), normalize.gene.length = F, variable.genes = "de",
  • fine.tune = F, do.signatures = T, clusters = clusters, do.main.types = T,
  • reduce.file.size = T, numCores = 1) Error in CreateSinglerSeuratObject(counts, annot = ann, "pbmc", min.genes = 0, : 没有"CreateSinglerSeuratObject"这个函数
dviraran commented 4 years ago

Hi,

This version of SingleR and this associated repository is not maintained anymore. SingleR is now in bioconductor, and this function was deprecated - https://bioconductor.org/packages/release/bioc/html/SingleR.html. The new github repository can be found here - https://github.com/LTLA/SingleR.

Best, Dvir