search

dviraran / SingleR

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
GNU General Public License v3.0
260 stars 95 forks source link

Download failed #133

Closed chansigit closed 4 years ago

chansigit commented 4 years ago

I got the following error while running the SingleR() function, what's wrong with the database?

Warning message: “download failed web resource path: ‘https://experimenthub.bioconductor.org/metadata/experimenthub.sqlite3’ local file path: ‘/tmp/Rtmp6O20XO/BiocFileCache/2a247d3996cd_experimenthub.sqlite3’ reason: Timeout was reached: [experimenthub.bioconductor.org] Connection timed out after 10000 milliseconds” Warning message: “bfcadd() failed; resource removed rid: BFC1 fpath: ‘https://experimenthub.bioconductor.org/metadata/experimenthub.sqlite3’ reason: download failed”

Error in .util_download(x, rid[i], proxy, config, "bfcadd()", ...): bfcadd() failed; see warnings()

dviraran commented 4 years ago

Please post issues in https://github.com/LTLA/SingleR

Thanks, Dvir