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dviraran / SingleR

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
GNU General Public License v3.0
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Retrieving a list of marker genes which were used assign cell type labels to clusters #141

Open jdd1e16 opened 3 years ago

jdd1e16 commented 3 years ago

Hello, I am using SingleR within python with the BlueprintEncodeData reference dataset. I am successfully getting my predicted cell type annotations for my distinct clusters. I was just wondering however, if there is a way in which i could retrieve a list of genes which are being used to assign the cell type labels to each cluster? Thanks in advance! James

dviraran commented 3 years ago

Please post issues in https://github.com/LTLA/SingleR