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dviraran / SingleR

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
GNU General Public License v3.0
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SingleR error #158

Open Jessa135 opened 4 months ago

Jessa135 commented 4 months ago

Please post issues in https://github.com/LTLA/SingleR

hi, I'm using R package SingleR to annotate cell types, but I met an error:

> refdata <- MonacoImmuneData() 1708402709200

Error in collect(): ! Failed to collect lazy table. Caused by error in db_collect(): ! Arguments in ... must be used. ✖ Problematic argument: • ..1 = Inf ℹ Did you misspell an argument name?

I run rlang::last_trace() 1708402856524

I re-installed the packages "SingleR" and "dbplyr“， but it didn't work. my R version is "R version 4.2.2 (2022-10-31)"

I could not find the cause of this error. Thank you for being helpful.

dgoekbuget commented 4 months ago

Downgrading dbplyr is a workaround for me: devtools::install_version("dbplyr", version = "2.3.3")