calculation of non default number of pcs

dviraran / SingleR

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)

GNU General Public License v3.0

271 stars 98 forks source link

calculation of non default number of pcs #24

Closed zhihua-chen closed 5 years ago

zhihua-chen commented 5 years ago

Currently, the npcs parameter is not passed on to Seurat's RunPCA.

dviraran commented 5 years ago

Thanks. As far as I understand this only matters if npca>20, since this is only the number of computed pcs, not the number used for clustering/tSNE plot.