dviraran / SingleR

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
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calculation of non default number of pcs #24

Closed zhihua-chen closed 5 years ago

zhihua-chen commented 5 years ago

Currently, the npcs parameter is not passed on to Seurat's RunPCA.

dviraran commented 5 years ago

Thanks. As far as I understand this only matters if npca>20, since this is only the number of computed pcs, not the number used for clustering/tSNE plot.