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dviraran / SingleR

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
GNU General Public License v3.0
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Performing DE like in SingleR Browser in command line #83

Open ChaDuss opened 5 years ago

ChaDuss commented 5 years ago

Hi, i can't load my singleR object on the singleR web browser maybe because of the size (more than 300 Mo), so i would like to know how can i perform DE expression in R with command line, i'm sorry but i can't find the R function in singleR package.

Thank you so much for your answer.

Bests

Charles

dviraran commented 5 years ago

Hi,

The DE analysis is performed using Seurat, it is not a SingleR function. SingleR just helps you choose the cells of interest.

You can download now the SingleR webtool and run it locally. See here.

Best, Dvir

ChaDuss commented 5 years ago

Tanks it works very well.

Le lun. 1 juil. 2019 à 18:59, dviraran notifications@github.com a écrit :

Hi,

The DE analysis is performed using Seurat, it is not a SingleR function. SingleR just helps you choose the cells of interest.

You can download now the SingleR webtool and run it locally. See here https://github.com/dviraran/SingleR/tree/master/SingleRbrowseR-standalone .

Best, Dvir

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