UMAP instead of tSNE - Githubissues

dviraran / SingleR

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)

GNU General Public License v3.0

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Closed akhst7 closed 5 years ago

akhst7 commented 5 years ago

Since a CreateSinglerSeuratObject contans umap coordinates, is it possible to implement UMAP in addition to tSNE on a Single_R web site ?

dviraran commented 5 years ago

You can choose whichever coordinates to use. Just replace it in the object (@xy).

But its a good idea In future versions to allow to toggle between the different coordinates.

akhst7 commented 5 years ago

Great. It will be great if there is an option (something like "visualization method " ) in the analysis page. Anyway, thanks