jrnick7
commented
5 years ago I suggest you could try to install as the README showed [devtools::install_github('dviraran/SingleR')]
Closed nbliangying closed 5 years ago
jrnick7
commented
5 years ago I suggest you could try to install as the README showed [devtools::install_github('dviraran/SingleR')]
sumethakannan
commented
5 years ago that is also failing with this error message
Error: Failed to install 'unknown package' from GitHub: Timeout was reached: Connection timed out after 10000 milliseconds
nbliangying
commented
5 years ago I have done all my efforts to install SingleR package. But it still cannot work.
Method 1: devtools::install_github('dviraran/SingleR')
Downloading GitHub repo dviraran/SingleR@master Error: Failed to install 'SingleR' from GitHub: incomplete block on file
Method 2: devtools::install_local("D://SingleR-master.zip")
These packages have more recent versions available. Which would you like to update? 1: All 2: CRAN packages only 3: None 4: ggplot2 (3.1.1 -> 3.2.0 ) [CRAN] 5: Biobase (2.40.0 -> 2.42.0) [CRAN] 6: callr (3.2.0 -> 3.3.1 ) [CRAN] 7: BiocParallel (1.14.2 -> 1.16.6) [CRAN] 8: Summarize... (1.10.1 -> 1.12.0) [CRAN] 9: vctrs (0.1.0 -> 0.2.0 ) [CRAN] 10: blob (1.1.1 -> 1.2.0 ) [CRAN] 11: openssl (1.4 -> 1.4.1 ) [CRAN] 12: processx (3.3.1 -> 3.4.1 ) [CRAN] 13: GenomicRa... (1.32.7 -> 1.34.0) [CRAN] 14: GenomeInfoDb (1.16.0 -> 1.18.2) [CRAN]
Enter one or more numbers, or an empty line to skip updates: 3
installing source package 'SingleR' ... R data * moving datasets to lazyload DB byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : there is no package called 'cluster' ERROR: lazy loading failed for package 'SingleR' removing 'd:/R/R-3.5.2/library/SingleR' In R CMD INSTALL Error: Failed to install 'SingleR-master.zip' from local: (converted from warning) installation of package ‘C:/Users/ADMINI~1/AppData/Local/Temp/RtmpqYOhOI/remotes22943a604753/SingleR’ had non-zero exit status
Method 3: I have try downloading SingleR zip file,but I can't install it directly using install.package.
install.packages("D:/SingleR-master.zip", repos = NULL, type = "win.binary") Warning in install.packages : cannot open compressed file 'SingleR-master/DESCRIPTION', probable reason 'No such file or directory' Error in install.packages : cannot open the connection Warning message: closing unused connection 4 (dviraran-SingleR-4bb890a/data/hpca.rda)
nbliangying
commented
5 years ago I have done all my efforts to install SingleR package. But it still cannot work.
Method 1: devtools::install_github('dviraran/SingleR')
Downloading GitHub repo dviraran/SingleR@master Error: Failed to install 'SingleR' from GitHub: incomplete block on file
Method 2:
I have try downloading SingleR zip file： devtools::install_local("D://SingleR-master.zip")
These packages have more recent versions available. Which would you like to update? 1: All 2: CRAN packages only 3: None 4: ggplot2 (3.1.1 -> 3.2.0 ) [CRAN] 5: Biobase (2.40.0 -> 2.42.0) [CRAN] 6: callr (3.2.0 -> 3.3.1 ) [CRAN] 7: BiocParallel (1.14.2 -> 1.16.6) [CRAN] 8: Summarize... (1.10.1 -> 1.12.0) [CRAN] 9: vctrs (0.1.0 -> 0.2.0 ) [CRAN] 10: blob (1.1.1 -> 1.2.0 ) [CRAN] 11: openssl (1.4 -> 1.4.1 ) [CRAN] 12: processx (3.3.1 -> 3.4.1 ) [CRAN] 13: GenomicRa... (1.32.7 -> 1.34.0) [CRAN] 14: GenomeInfoDb (1.16.0 -> 1.18.2) [CRAN]
Enter one or more numbers, or an empty line to skip updates: 3
installing source package 'SingleR' ... R data * moving datasets to lazyload DB byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : there is no package called 'cluster' ERROR: lazy loading failed for package 'SingleR' removing 'd:/R/R-3.5.2/library/SingleR' In R CMD INSTALL Error: Failed to install 'SingleR-master.zip' from local: (converted from warning) installation of package ‘C:/Users/ADMINI~1/AppData/Local/Temp/RtmpqYOhOI/remotes22943a604753/SingleR’ had non-zero exit status
Method 3: I have try downloading SingleR zip file,but I can't install it directly using install.package.
install.packages("D:/SingleR-master.zip", repos = NULL, type = "win.binary") Warning in install.packages : cannot open compressed file 'SingleR-master/DESCRIPTION', probable reason 'No such file or directory' Error in install.packages : cannot open the connection Warning message: closing unused connection 4 (dviraran-SingleR-4bb890a/data/hpca.rda)
At 2019-07-19 23:54:25, "jrnick7" notifications@github.com wrote:
I suggest you could try to install as the README showed [devtools::install_github('dviraran/SingleR')]
— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or mute the thread.
I tried to install it with the command: devtools::install_local("D://SingleR-master.zip")
These packages have more recent versions available. Which would you like to update? 1: All
2: CRAN packages only
3: None
4: ggplot2 (3.1.1 -> 3.2.0 ) [CRAN] 5: Biobase (2.40.0 -> 2.42.0) [CRAN] 6: callr (3.2.0 -> 3.3.1 ) [CRAN] 7: BiocParallel (1.14.2 -> 1.16.6) [CRAN] 8: Summarize... (1.10.1 -> 1.12.0) [CRAN] 9: vctrs (0.1.0 -> 0.2.0 ) [CRAN] 10: blob (1.1.1 -> 1.2.0 ) [CRAN] 11: openssl (1.4 -> 1.4.1 ) [CRAN] 12: processx (3.3.1 -> 3.4.1 ) [CRAN] 13: GenomicRa... (1.32.7 -> 1.34.0) [CRAN] 14: GenomeInfoDb (1.16.0 -> 1.18.2) [CRAN]
Enter one or more numbers, or an empty line to skip updates: 3