dviraran / SingleR

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
GNU General Public License v3.0
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Installation Failed #96

Closed nbliangying closed 5 years ago

nbliangying commented 5 years ago

I tried to install it with the command: devtools::install_github('dviraran/SingleR')

library(devtools) devtools::install_github('dviraran/SingleR') Downloading GitHub repo dviraran/SingleR@master These packages have more recent versions available. Which would you like to update?

1: All
2: CRAN packages only
3: None
4: ggplot2 (3.1.1 -> 3.2.0 ) [CRAN] 5: doFuture (0.8.0 -> 0.8.1 ) [CRAN] 6: Rcpp (1.0.1 -> 1.0.2 ) [CRAN] 7: Biobase (2.40.0 -> 2.42.0) [CRAN] 8: callr (3.2.0 -> 3.3.1 ) [CRAN] 9: testthat (2.1.1 -> 2.2.1 ) [CRAN] 10: BiocParallel (1.14.2 -> 1.16.6) [CRAN] 11: Summarize... (1.10.1 -> 1.12.0) [CRAN] 12: vctrs (0.1.0 -> 0.2.0 ) [CRAN] 13: RSQLite (2.1.1 -> 2.1.2 ) [CRAN] 14: blob (1.1.1 -> 1.2.0 ) [CRAN] 15: clipr (0.6.0 -> 0.7.0 ) [CRAN] 16: curl (3.3 -> 4.0 ) [CRAN] 17: openssl (1.4 -> 1.4.1 ) [CRAN] 18: processx (3.3.1 -> 3.4.1 ) [CRAN] 19: GenomicRa... (1.32.7 -> 1.34.0) [CRAN] 20: GenomeInfoDb (1.16.0 -> 1.18.2) [CRAN]

Enter one or more numbers, or an empty line to skip updates: 3 WARNING: Rtools is required to build R packages, but is not currently installed.

Please download and install Rtools 3.5 from http://cran.r-project.org/bin/windows/Rtools/. √ checking for file 'C:\Users\Administrator\AppData\Local\Temp\RtmpmmAP9p\remotes144410f2315d\dviraran-SingleR-4bb890a/DESCRIPTION' ...