I tried to install it with the command:
devtools::install_github('dviraran/SingleR')
library(devtools)
devtools::install_github('dviraran/SingleR')
Downloading GitHub repo dviraran/SingleR@master
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3
WARNING: Rtools is required to build R packages, but is not currently installed.
Please download and install Rtools 3.5 from http://cran.r-project.org/bin/windows/Rtools/.
√ checking for file 'C:\Users\Administrator\AppData\Local\Temp\RtmpmmAP9p\remotes144410f2315d\dviraran-SingleR-4bb890a/DESCRIPTION' ...
checking for LF line-endings in source and make files and shell scripts
checking for empty or unneeded directories
looking to see if a 'data/datalist' file should be added
building 'SingleR_1.0.1.tar.gz' (17.8s)
installing source package 'SingleR' ...
R
data
* moving datasets to lazyload DB
byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
there is no package called 'cluster'
ERROR: lazy loading failed for package 'SingleR'
removing 'd:/R/R-3.5.2/library/SingleR'
In R CMD INSTALL
Error: Failed to install 'SingleR' from GitHub:
(converted from warning) installation of package ‘C:/Users/ADMINI~1/AppData/Local/Temp/RtmpmmAP9p/file144428577d52/SingleR_1.0.1.tar.gz’ had non-zero exit status
In addition: Warning messages:
1: In untar2(tarfile, files, list, exdir) :
skipping pax global extended headers
2: In untar2(tarfile, files, list, exdir) :
skipping pax global extended headers
I tried to install it with the command: devtools::install_github('dviraran/SingleR')
1: All
2: CRAN packages only
3: None
4: ggplot2 (3.1.1 -> 3.2.0 ) [CRAN] 5: doFuture (0.8.0 -> 0.8.1 ) [CRAN] 6: Rcpp (1.0.1 -> 1.0.2 ) [CRAN] 7: Biobase (2.40.0 -> 2.42.0) [CRAN] 8: callr (3.2.0 -> 3.3.1 ) [CRAN] 9: testthat (2.1.1 -> 2.2.1 ) [CRAN] 10: BiocParallel (1.14.2 -> 1.16.6) [CRAN] 11: Summarize... (1.10.1 -> 1.12.0) [CRAN] 12: vctrs (0.1.0 -> 0.2.0 ) [CRAN] 13: RSQLite (2.1.1 -> 2.1.2 ) [CRAN] 14: blob (1.1.1 -> 1.2.0 ) [CRAN] 15: clipr (0.6.0 -> 0.7.0 ) [CRAN] 16: curl (3.3 -> 4.0 ) [CRAN] 17: openssl (1.4 -> 1.4.1 ) [CRAN] 18: processx (3.3.1 -> 3.4.1 ) [CRAN] 19: GenomicRa... (1.32.7 -> 1.34.0) [CRAN] 20: GenomeInfoDb (1.16.0 -> 1.18.2) [CRAN]
Enter one or more numbers, or an empty line to skip updates: 3 WARNING: Rtools is required to build R packages, but is not currently installed.
Please download and install Rtools 3.5 from http://cran.r-project.org/bin/windows/Rtools/. √ checking for file 'C:\Users\Administrator\AppData\Local\Temp\RtmpmmAP9p\remotes144410f2315d\dviraran-SingleR-4bb890a/DESCRIPTION' ...
preparing 'SingleR': (2s) √ checking DESCRIPTION meta-information ...
checking for LF line-endings in source and make files and shell scripts
checking for empty or unneeded directories
looking to see if a 'data/datalist' file should be added
building 'SingleR_1.0.1.tar.gz' (17.8s)
installing source package 'SingleR' ... R data * moving datasets to lazyload DB byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : there is no package called 'cluster' ERROR: lazy loading failed for package 'SingleR'
removing 'd:/R/R-3.5.2/library/SingleR' In R CMD INSTALL Error: Failed to install 'SingleR' from GitHub: (converted from warning) installation of package ‘C:/Users/ADMINI~1/AppData/Local/Temp/RtmpmmAP9p/file144428577d52/SingleR_1.0.1.tar.gz’ had non-zero exit status In addition: Warning messages: 1: In untar2(tarfile, files, list, exdir) : skipping pax global extended headers 2: In untar2(tarfile, files, list, exdir) : skipping pax global extended headers