Seurat 3 comes with a handy FindIntegrationAnchors and IntegrateData to compare differences and similarities between two scRNAseq data sets. Is it possible to create xCell object for this type of Seurat object ?
You mean SingleR, right? SingleR uses the expression levels, so you can use any data you want. Just use as.matrix(combined@assays$RNA@data) as the counts input.
Hi,
Seurat 3 comes with a handy
FindIntegrationAnchors
andIntegrateData
to compare differences and similarities between two scRNAseq data sets. Is it possible to create xCell object for this type of Seurat object ?Thanks.