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dviraran / xCell

Cell types enrichment analysis
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Nanostring GeoMx #73

Open RM83 opened 1 year ago

RM83 commented 1 year ago

Hi, I saw that xCell is intended for bulk gene expression. Is xCell suitable for Nanostring GeoMx data to predict cell type enrichment?

Thank you.

dviraran commented 1 year ago

Hi,

Probably not since it GeoMx only provides a measurement for a small number of genes, and the current version of xCell can't be trained for a specific data type.

Best, Dvir