Open RM83 opened 1 year ago
Hi, I saw that xCell is intended for bulk gene expression. Is xCell suitable for Nanostring GeoMx data to predict cell type enrichment?
Thank you.
Hi,
Probably not since it GeoMx only provides a measurement for a small number of genes, and the current version of xCell can't be trained for a specific data type.
Best, Dvir
Hi, I saw that xCell is intended for bulk gene expression. Is xCell suitable for Nanostring GeoMx data to predict cell type enrichment?
Thank you.