min sample error catching for --ld

dvitale199 / GenoTools

GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comprehensive sample/variant QC, and ancestry estimation. Ideal for computational biology and genetics research.

Apache License 2.0

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min sample error catching for --ld #178

Open dvitale199 opened 4 months ago

dvitale199 commented 4 months ago

Is your feature request related to a problem? Please describe. when running --ld with <50 samples, the process fails. It is slightly difficult to judge what the issue is in this case

Describe the solution you'd like up-front checks for sample N with loud warnings for insufficient size for --ld

dvitale199 commented 4 months ago

Min sample catch needs to be for founders, specifically. Must have >50 founders for --ld and --het to work