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dvitale199
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GenoTools
GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comprehensive sample/variant QC, and ancestry estimation. Ideal for computational biology and genetics research.
Apache License 2.0
22
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7
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*common_snps file fixes and documentation
#139
mkoretsky1
closed
9 months ago
0
edit docs for consistency
#138
sammyhong23
closed
9 months ago
0
Update README.md
#137
dvitale199
closed
9 months ago
0
updated setup reqs to min req (aside from umap_learn)
#136
dvitale199
closed
9 months ago
0
Update README.md
#135
dvitale199
closed
9 months ago
0
Update README.md
#134
dvitale199
closed
9 months ago
0
added license to all files
#133
dvitale199
closed
9 months ago
0
Added log header
#132
nvk23
closed
9 months ago
0
updated setup.py
#131
dvitale199
closed
9 months ago
0
Create LICENSE
#130
dvitale199
closed
9 months ago
0
added new docs
#129
dvitale199
closed
9 months ago
0
Readme
#128
dvitale199
closed
9 months ago
0
updated readme with full options
#127
dvitale199
closed
9 months ago
0
remove labels requirement for new ref panel
#126
mkoretsky1
closed
9 months ago
0
Download
#125
dvitale199
closed
9 months ago
0
Update .gitignore
#124
dvitale199
closed
9 months ago
0
fixing CAH, assoc, and full_output False, and PCA warning
#123
mkoretsky1
closed
9 months ago
0
PCA failing for n_components must be between 0 and min(n_samples,n_features) with large sample/snp number
#122
dvitale199
closed
9 months ago
0
--gwas fails to build output dict when not run in full pipeline
#121
dvitale199
closed
9 months ago
0
Rel output
#120
sammyhong23
closed
9 months ago
0
adding ancestry labels to output
#119
mkoretsky1
closed
9 months ago
0
checking for case/control files
#118
mkoretsky1
closed
9 months ago
0
adding gcloud functionality
#117
mkoretsky1
closed
10 months ago
0
adding CAH ancestry and fixing logging
#116
mkoretsky1
closed
10 months ago
0
ref_labels added as PHENO1 in ref panel
#115
dvitale199
opened
10 months ago
0
adding input flags and related prune output fix
#114
mkoretsky1
closed
10 months ago
0
qc for low sample sizes and umap versioning
#113
mkoretsky1
closed
10 months ago
0
split command in readme
#112
dvitale199
closed
10 months ago
0
adding container subdirectory init file and package data to setup
#111
mkoretsky1
closed
10 months ago
0
plink2 file creation update and adding to upfront_checks
#110
mkoretsky1
closed
10 months ago
0
Update README.md
#109
mkoretsky1
closed
10 months ago
0
related prune output fix part 2
#108
mkoretsky1
closed
10 months ago
0
fixing related samples df for output
#107
mkoretsky1
closed
10 months ago
0
Arg import
#106
dvitale199
closed
10 months ago
0
Arg import
#105
dvitale199
closed
10 months ago
0
relatedness degree added to relatedness output
#104
dvitale199
closed
9 months ago
1
related typo and defaulting to mind 0.05 in --all-sample
#103
mkoretsky1
closed
10 months ago
0
fixing gwas error
#102
mkoretsky1
closed
10 months ago
0
cleaned up old scripts
#101
dvitale199
closed
10 months ago
0
Update README.md
#100
dvitale199
closed
10 months ago
0
Docs
#99
dvitale199
closed
10 months ago
0
fixing executable entrypoint
#98
mkoretsky1
closed
10 months ago
0
Qc refactor
#97
mkoretsky1
closed
10 months ago
0
Update concat_logs for test use case
#96
nvk23
closed
10 months ago
0
Gwas
#95
dvitale199
closed
10 months ago
0
Gwas
#94
dvitale199
closed
10 months ago
0
add ld prune options to main, more file cleanup
#93
mkoretsky1
closed
10 months ago
0
LD-pruning method
#92
sammyhong23
closed
10 months ago
0
Update temp directory check
#91
nvk23
closed
10 months ago
0
fixing related prune issue
#90
mkoretsky1
closed
10 months ago
0
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