dwbapst / paleotree

R library for analyzing, time-scaling and simulating phylogenies of extinct/fossil lineages. Also plots diversity curves for stratigraphic range data and phylogenies, including combinations of these two data types.

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Changes to deal with paleobiodb 1.2 #11

Closed bomeara closed 5 years ago

bomeara commented 5 years ago

── R CMD check results ────────── paleotree 3.1.4 ────
Duration: 1m 21.5s

0 errors ✔ | 0 warnings ✔ | 0 notes ✔

codecov-io commented 5 years ago

Codecov Report

Merging #11 into master will decrease coverage by <.01%. The diff coverage is 0%.

@@            Coverage Diff            @@
##           master     #11      +/-   ##
=========================================
- Coverage    1.45%   1.45%   -0.01%     
=========================================
  Files          70      70              
  Lines        7351    7353       +2     
=========================================
  Hits          107     107              
- Misses       7244    7246       +2

Impacted Files	Coverage Δ
R/makePBDBtaxonTree.R	`0% <0%> (ø)`	:arrow_up:

Continue to review full report at Codecov.

Legend - Click here to learn more Δ = absolute <relative> (impact), ø = not affected, ? = missing data Powered by Codecov. Last update 5e31594...bd7839e. Read the comment docs.

codecov-io commented 5 years ago

Codecov Report

Merging #11 into master will decrease coverage by <.01%. The diff coverage is 0%.

@@            Coverage Diff            @@
##           master     #11      +/-   ##
=========================================
- Coverage    1.45%   1.45%   -0.01%     
=========================================
  Files          70      70              
  Lines        7351    7353       +2     
=========================================
  Hits          107     107              
- Misses       7244    7246       +2

Impacted Files	Coverage Δ
R/makePBDBtaxonTree.R	`0% <0%> (ø)`	:arrow_up:

Continue to review full report at Codecov.

Legend - Click here to learn more Δ = absolute <relative> (impact), ø = not affected, ? = missing data Powered by Codecov. Last update 5e31594...bd7839e. Read the comment docs.

dwbapst commented 5 years ago

I think this isn't really necessary now - the larger rewrite of the functions for getting a taxon tree from PBDB took care of whatever issues these fixes were meant to solve.