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dwbapst / paleotree

R library for analyzing, time-scaling and simulating phylogenies of extinct/fossil lineages. Also plots diversity curves for stratigraphic range data and phylogenies, including combinations of these two data types.
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Error timeList #33

Open Je-AlbertDC opened 3 years ago

Je-AlbertDC commented 3 years ago

Hello,

I hope this is the right place for this kind of error. I am trying to time-scale a phylogeny. So far, I was able to create the input files. The problem appears when I use the function bin_timePaleoPhy as in the next example: timetree <- bin_timePaleoPhy(tree = retioTree, timeList = retioRanges, type = "basic", ntrees = 1, plot = TRUE) The console throws me the following error:

Error in timeList[[1]][go, ] : subíndice fuera de los límites

You have any idea what it means? The structure of my object is quite the same the retiolitinae data.

dwbapst commented 2 years ago

Je-Albert,

I apologize for not responding for 1.5 years... but honestly, March 2020 still feels like yesterday to me. I have been neglecting paleotree maintenance during this interval, and I apologize for dropping the ball on this issue.

I am not sure I understand the error described here. I think I'd need to see more of your code and the input files to comment on why this issue is arising.

Je-AlbertDC commented 2 years ago

Hi David,

I'll try to get the data and see if I can run it again. Thank you for your response.

Cheers,

El mié, 20 abr 2022 a la(s) 20:45, David Bapst @.***) escribió:

Je-Albert,

I apologize for not responding for 1.5 years... but honestly, March 2020 still feels like yesterday to me. I have been neglecting paleotree maintenance during this interval, and I apologize for dropping the ball on this issue.

I am not sure I understand the error described here. I think I'd need to see more of your code and the input files to comment on why this issue is arising.

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