configuere error on linux (ubuntu) can't find tirpc/rpc/types.h

epifanio commented 2 years ago

Describe the bug

The latest stable release 5.7.8 doesn't build on most linux OS - I tried both ubuntu and debian distro Here the logs for ubutnu 21.04

To Reproduce Provide information sufficient to reproduce the behavior:

mkdir -p /opt/mb && cd /opt/mb && wget https://github.com/dwcaress/MB-System/archive/5.7.8.tar.gz && \
    tar -zxvf 5.7.8.tar.gz && \
    cd MB-System-5.7.8 && \
    sh autogen.sh && \
    ./configure --disable-mbtools --with-proj-include=/usr/include

Expected behavior No configure errors

configure log:

checking tirpc/rpc/types.h presence... no
checking for tirpc/rpc/types.h... no
configure: error: Required header <rpc/types.h> not found, check include path and installed development packages

Note: the file is here /usr/include/tirpc/rpc/types.h

Computing context (please complete the following information):

OS: Ubuntu 21.04
MB-System version 5.7.8
GMT version 6.3.0

Additional context Note: mb system v 5.7.5 builds without errors on the same system - the configure error mentioned in the bug report applies also to 5.7.6 release and to the Github master branch.

epifanio commented 2 years ago

This problem persist also with the latest ubuntu release - 22.04 can anyone help in identifying the missing dependency?

the following:

apt-file search rpc/types.h

returns:

libntirpc-dev: /usr/include/ntirpc/rpc/types.h
libtirpc-dev: /usr/include/tirpc/rpc/types.h
...

I have installed both, libtirpc-dev and libntirpc-dev but the error persists :

checking for rpc/rpc.h... no
checking for tirpc/rpc/rpc.h... no
checking for rpc/types.h... no
checking for tirpc/rpc/types.h... no
configure: error: Required header <rpc/types.h> not found, check include path and installed development packages

I am using " https://github.com/dwcaress/MB-System/archive/5.7.5.tar.gz" as it is the latest release that I know that is compatible with the MB-System PDAL plug-in - but I tried to build also with v5.7.6/7/8 but I got the same configure error.

@dwcaress @schwehr - Thanks for any advice.

dwcaress commented 2 years ago

Please try the beta release: https://github.com/dwcaress/MB-System/releases/tag/5.7.9beta29

I am able to build this on Ubuntu 20.04.

Cheers, Dave

David W. Caress Principal Engineer Seafloor Mapping Lab

Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, CA 95039

@.*** http://www.mbari.org/~caress/

Phone: 831-775-1775

tomoreilly commented 2 years ago

Hi guys,

For some reason I can no longer find libr7kr or libmframe on my ubuntu system, nor do I see any obvious source files for them. Where do those libraries come from?

Thanks Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) @.*** (email) http://www.mbari.org (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "David Caress" @.> To: "dwcaress" @.> Cc: "Subscribed" @.***> Sent: Friday, May 13, 2022 8:16:26 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

[POSSIBLE IMPERSONATION: This message is using the name of an MBARI account holder and has originated from outside of the organization. Please review the content and sender information carefully.]

Please try the beta release: https://github.com/dwcaress/MB-System/releases/tag/5.7.9beta29

I am able to build this on Ubuntu 20.04.

Cheers, Dave

David W. Caress Principal Engineer Seafloor Mapping Lab

Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, CA 95039

@.*** http://www.mbari.org/~caress/

Phone: 831-775-1775

— Reply to this email directly, [ https://github.com/dwcaress/MB-System/issues/1262#issuecomment-1126167006 | view it on GitHub ] , or [ https://github.com/notifications/unsubscribe-auth/AAS327FCOTI3LZ6NBYZAXVLVJZW4VANCNFSM5MT7GKNQ | unsubscribe ] . You are receiving this because you are subscribed to this thread. Message ID: @.***>

tomoreilly commented 2 years ago

libr7kr and libmframe are in MB-SYSTEM/src/mbtrn and src/mbtrnframe, respectively. They are related to TRN.

Not sure if it's related, but Dave just committed some build system changes to a beta release that updated some build paths for compatibility with OSX Monterey.

Are you working from a very recent (<24h) tree?

kent

tomoreilly commented 2 years ago

Thanks Kent. I'm working in the feature-newgui branch which I haven't pulled recently, so don't expect to see the recent changes you refer to.

Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) @.*** (email) http://www.mbari.org (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "Kent Headley" @.> To: "Tom O'Reilly" @.> Cc: "dwcaress" @.***> Sent: Friday, May 13, 2022 10:40:21 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

libr7kr and libmframe are in MB-SYSTEM/src/mbtrn and src/mbtrnframe, respectively. They are related to TRN.

Not sure if it's related, but Dave just committed some build system changes to a beta release that updated some build paths for compatibility with OSX Monterey.

Are you working from a very recent (<24h) tree?

kent

On May 13, 2022, at 10:35 AM, Tom O'Reilly < [ @. | @. ] > wrote:

Hi guys,

For some reason I can no longer find libr7kr or libmframe on my ubuntu system, nor do I see any obvious source files for them. Where do those libraries come from?

Thanks Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) [ @. | @. ] (email) [ http://www.mbari.org/ | http://www.mbari.org ] (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "David Caress" < [ @. | @. ] > To: "dwcaress" < [ @. | @. ] > Cc: "Subscribed" < [ @. | @. ] > Sent: Friday, May 13, 2022 8:16:26 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

[POSSIBLE IMPERSONATION: This message is using the name of an MBARI account holder and has originated from outside of the organization. Please review the content and sender information carefully.]

Please try the beta release: [ https://github.com/dwcaress/MB-System/releases/tag/5.7.9beta29 | https://github.com/dwcaress/MB-System/releases/tag/5.7.9beta29 ]

I am able to build this on Ubuntu 20.04.

Cheers, Dave

David W. Caress Principal Engineer Seafloor Mapping Lab

Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, CA 95039

@.*** [ http://www.mbari.org/~caress/ | http://www.mbari.org/~caress/ ]

Phone: 831-775-1775

— Reply to this email directly, [ https://github.com/dwcaress/MB-System/issues/1262#issuecomment-1126167006 | view it on GitHub ] , or [ https://github.com/notifications/unsubscribe-auth/AAS327FCOTI3LZ6NBYZAXVLVJZW4VANCNFSM5MT7GKNQ | unsubscribe ] . You are receiving this because you are subscribed to this thread. Message ID: < [ @. | @. ] >

tomoreilly commented 2 years ago

Ok, are you using cmake or autotools to build?

tomoreilly commented 2 years ago

Hi Kent,

Are r7kr and mframe libraries built from source in src/mbtrn? Or are they third-party?

Thanks Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) @.*** (email) http://www.mbari.org (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "Kent Headley" @.> To: "Tom O'Reilly" @.> Cc: "dwcaress" @.***> Sent: Friday, May 13, 2022 10:40:21 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

libr7kr and libmframe are in MB-SYSTEM/src/mbtrn and src/mbtrnframe, respectively. They are related to TRN.

Not sure if it's related, but Dave just committed some build system changes to a beta release that updated some build paths for compatibility with OSX Monterey.

Are you working from a very recent (<24h) tree?

kent

On May 13, 2022, at 10:35 AM, Tom O'Reilly < [ @. | @. ] > wrote:

Hi guys,

For some reason I can no longer find libr7kr or libmframe on my ubuntu system, nor do I see any obvious source files for them. Where do those libraries come from?

Thanks Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) [ @. | @. ] (email) [ http://www.mbari.org/ | http://www.mbari.org ] (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "David Caress" < [ @. | @. ] > To: "dwcaress" < [ @. | @. ] > Cc: "Subscribed" < [ @. | @. ] > Sent: Friday, May 13, 2022 8:16:26 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

[POSSIBLE IMPERSONATION: This message is using the name of an MBARI account holder and has originated from outside of the organization. Please review the content and sender information carefully.]

Please try the beta release: [ https://github.com/dwcaress/MB-System/releases/tag/5.7.9beta29 | https://github.com/dwcaress/MB-System/releases/tag/5.7.9beta29 ]

I am able to build this on Ubuntu 20.04.

Cheers, Dave

David W. Caress Principal Engineer Seafloor Mapping Lab

Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, CA 95039

@.*** [ http://www.mbari.org/~caress/ | http://www.mbari.org/~caress/ ]

Phone: 831-775-1775

— Reply to this email directly, [ https://github.com/dwcaress/MB-System/issues/1262#issuecomment-1126167006 | view it on GitHub ] , or [ https://github.com/notifications/unsubscribe-auth/AAS327FCOTI3LZ6NBYZAXVLVJZW4VANCNFSM5MT7GKNQ | unsubscribe ] . You are receiving this because you are subscribed to this thread. Message ID: < [ @. | @. ] >

tomoreilly commented 2 years ago

I see that MB-System/CMakeLists.txt takes option -DbuildTrn=1, which I didn't use for the build that flagged those missing libraries. Now when I specify '-DbuildTrn=1' to cmake I get:

CMake Error at CMakeLists.txt:298 (add_subdirectory): The source directory

/home/oreilly/projects/mb-system/MB-System/src/mbtrn

does not contain a CMakeLists.txt file.

So maybe my feature-newgui branch is far out of date.

When I try to pull on that branch git fails - says I need to commit over 100 .ps files in src/ps. Not sure what modified them - are they auto-generated? If so, why are they source-maintained?

Thanks Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) @.*** (email) http://www.mbari.org (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "Kent Headley" @.> To: "Tom O'Reilly" @.> Cc: "dwcaress" @.***> Sent: Friday, May 13, 2022 10:45:26 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

Ok, are you using cmake or autotools to build?

On May 13, 2022, at 10:44 AM, Tom O'Reilly < [ @. | @. ] > wrote:

Thanks Kent. I'm working in the feature-newgui branch which I haven't pulled recently, so don't expect to see the recent changes you refer to.

Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) [ @. | @. ] (email) [ http://www.mbari.org/ | http://www.mbari.org ] (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "Kent Headley" < [ @. | @. ] > To: "Tom O'Reilly" < [ @. | @. ] > Cc: "dwcaress" < [ @. | @. ] > Sent: Friday, May 13, 2022 10:40:21 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

libr7kr and libmframe are in MB-SYSTEM/src/mbtrn and src/mbtrnframe, respectively. They are related to TRN.

Not sure if it's related, but Dave just committed some build system changes to a beta release that updated some build paths for compatibility with OSX Monterey.

Are you working from a very recent (<24h) tree?

kent

BQ_BEGIN

On May 13, 2022, at 10:35 AM, Tom O'Reilly < [ @. | @. ] > wrote:

Hi guys,

For some reason I can no longer find libr7kr or libmframe on my ubuntu system, nor do I see any obvious source files for them. Where do those libraries come from?

Thanks Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) [ @. | @. ] (email) [ http://www.mbari.org/ | http://www.mbari.org ] (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "David Caress" < [ @. | @. ] > To: "dwcaress" < [ @. | @. ] > Cc: "Subscribed" < [ @. | @. ] > Sent: Friday, May 13, 2022 8:16:26 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

[POSSIBLE IMPERSONATION: This message is using the name of an MBARI account holder and has originated from outside of the organization. Please review the content and sender information carefully.]

Please try the beta release: [ https://github.com/dwcaress/MB-System/releases/tag/5.7.9beta29 | https://github.com/dwcaress/MB-System/releases/tag/5.7.9beta29 ]

I am able to build this on Ubuntu 20.04.

Cheers, Dave

David W. Caress Principal Engineer Seafloor Mapping Lab

Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, CA 95039

@.*** [ http://www.mbari.org/~caress/ | http://www.mbari.org/~caress/ ]

Phone: 831-775-1775

— Reply to this email directly, [ https://github.com/dwcaress/MB-System/issues/1262#issuecomment-1126167006 | view it on GitHub ] , or [ https://github.com/notifications/unsubscribe-auth/AAS327FCOTI3LZ6NBYZAXVLVJZW4VANCNFSM5MT7GKNQ | unsubscribe ] . You are receiving this because you are subscribed to this thread. Message ID: < [ @. | @. ] >

BQ_END

tomoreilly commented 2 years ago

I haven't tried a cmake build on ubuntu. Not too long ago, I merge changes from feature/new-gui into trndev, and may have changed a thing or two in the cmake TRN build that seemed broken.

You could try building the trndev branch as a diagnostic exercise.

Kent

tomoreilly commented 2 years ago

Somehow got myself into a bad git place with these 'modified' src/ps files. git status shows them all as 'modified' yet I cannot commit those changes - get 'fatal: cannot do a partial commit during a merge' when I try to commit any of them. Where do those .ps files come from?

Thanks Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) @.*** (email) http://www.mbari.org (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "Kent Headley" @.> To: "Tom O'Reilly" @.> Cc: "dwcaress" @.***> Sent: Friday, May 13, 2022 11:14:15 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

I haven't tried a cmake build on ubuntu. Not too long ago, I merge changes from feature/new-gui into trndev, and may have changed a thing or two in the cmake TRN build that seemed broken.

You could try building the trndev branch as a diagnostic exercise.

Kent

On May 13, 2022, at 10:48 AM, Tom O'Reilly < [ @. | @. ] > wrote:

Using cmake

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) [ @. | @. ] (email) [ http://www.mbari.org/ | http://www.mbari.org ] (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "Kent Headley" < [ @. | @. ] > To: "Tom O'Reilly" < [ @. | @. ] > Cc: "dwcaress" < [ @. | @. ] > Sent: Friday, May 13, 2022 10:45:26 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

Ok, are you using cmake or autotools to build?

BQ_BEGIN

On May 13, 2022, at 10:44 AM, Tom O'Reilly < [ @. | @. ] > wrote:

Thanks Kent. I'm working in the feature-newgui branch which I haven't pulled recently, so don't expect to see the recent changes you refer to.

Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) [ @. | @. ] (email) [ http://www.mbari.org/ | http://www.mbari.org ] (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "Kent Headley" < [ @. | @. ] > To: "Tom O'Reilly" < [ @. | @. ] > Cc: "dwcaress" < [ @. | @. ] > Sent: Friday, May 13, 2022 10:40:21 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

libr7kr and libmframe are in MB-SYSTEM/src/mbtrn and src/mbtrnframe, respectively. They are related to TRN.

Not sure if it's related, but Dave just committed some build system changes to a beta release that updated some build paths for compatibility with OSX Monterey.

Are you working from a very recent (<24h) tree?

kent

BQ_BEGIN

On May 13, 2022, at 10:35 AM, Tom O'Reilly < [ @. | @. ] > wrote:

Hi guys,

For some reason I can no longer find libr7kr or libmframe on my ubuntu system, nor do I see any obvious source files for them. Where do those libraries come from?

Thanks Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) [ @. | @. ] (email) [ http://www.mbari.org/ | http://www.mbari.org ] (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "David Caress" < [ @. | @. ] > To: "dwcaress" < [ @. | @. ] > Cc: "Subscribed" < [ @. | @. ] > Sent: Friday, May 13, 2022 8:16:26 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

[POSSIBLE IMPERSONATION: This message is using the name of an MBARI account holder and has originated from outside of the organization. Please review the content and sender information carefully.]

Please try the beta release: [ https://github.com/dwcaress/MB-System/releases/tag/5.7.9beta29 | https://github.com/dwcaress/MB-System/releases/tag/5.7.9beta29 ]

I am able to build this on Ubuntu 20.04.

Cheers, Dave

David W. Caress Principal Engineer Seafloor Mapping Lab

Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, CA 95039

@.*** [ http://www.mbari.org/~caress/ | http://www.mbari.org/~caress/ ]

Phone: 831-775-1775

— Reply to this email directly, [ https://github.com/dwcaress/MB-System/issues/1262#issuecomment-1126167006 | view it on GitHub ] , or [ https://github.com/notifications/unsubscribe-auth/AAS327FCOTI3LZ6NBYZAXVLVJZW4VANCNFSM5MT7GKNQ | unsubscribe ] . You are receiving this because you are subscribed to this thread. Message ID: < [ @. | @. ] >

BQ_END

tomoreilly commented 2 years ago

Got myself out of that particular git hell by adding the '-i' flag to 'git commit'

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) @.*** (email) http://www.mbari.org (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "Tom O'Reilly" @.> To: "Kent Headley" @.> Cc: "dwcaress" @.***> Sent: Friday, May 13, 2022 11:23:32 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

Somehow got myself into a bad git place with these 'modified' src/ps files. git status shows them all as 'modified' yet I cannot commit those changes - get 'fatal: cannot do a partial commit during a merge' when I try to commit any of them. Where do those .ps files come from?

Thanks Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) @.*** (email) http://www.mbari.org (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "Kent Headley" @.> To: "Tom O'Reilly" @.> Cc: "dwcaress" @.***> Sent: Friday, May 13, 2022 11:14:15 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

I haven't tried a cmake build on ubuntu. Not too long ago, I merge changes from feature/new-gui into trndev, and may have changed a thing or two in the cmake TRN build that seemed broken.

You could try building the trndev branch as a diagnostic exercise.

Kent

On May 13, 2022, at 10:48 AM, Tom O'Reilly < [ @. | @. ] > wrote:

Using cmake

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) [ @. | @. ] (email) [ http://www.mbari.org/ | http://www.mbari.org ] (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "Kent Headley" < [ @. | @. ] > To: "Tom O'Reilly" < [ @. | @. ] > Cc: "dwcaress" < [ @. | @. ] > Sent: Friday, May 13, 2022 10:45:26 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

Ok, are you using cmake or autotools to build?

BQ_BEGIN

On May 13, 2022, at 10:44 AM, Tom O'Reilly < [ @. | @. ] > wrote:

Thanks Kent. I'm working in the feature-newgui branch which I haven't pulled recently, so don't expect to see the recent changes you refer to.

Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) [ @. | @. ] (email) [ http://www.mbari.org/ | http://www.mbari.org ] (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "Kent Headley" < [ @. | @. ] > To: "Tom O'Reilly" < [ @. | @. ] > Cc: "dwcaress" < [ @. | @. ] > Sent: Friday, May 13, 2022 10:40:21 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

libr7kr and libmframe are in MB-SYSTEM/src/mbtrn and src/mbtrnframe, respectively. They are related to TRN.

Not sure if it's related, but Dave just committed some build system changes to a beta release that updated some build paths for compatibility with OSX Monterey.

Are you working from a very recent (<24h) tree?

kent

BQ_BEGIN

On May 13, 2022, at 10:35 AM, Tom O'Reilly < [ @. | @. ] > wrote:

Hi guys,

For some reason I can no longer find libr7kr or libmframe on my ubuntu system, nor do I see any obvious source files for them. Where do those libraries come from?

Thanks Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) [ @. | @. ] (email) [ http://www.mbari.org/ | http://www.mbari.org ] (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "David Caress" < [ @. | @. ] > To: "dwcaress" < [ @. | @. ] > Cc: "Subscribed" < [ @. | @. ] > Sent: Friday, May 13, 2022 8:16:26 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

[POSSIBLE IMPERSONATION: This message is using the name of an MBARI account holder and has originated from outside of the organization. Please review the content and sender information carefully.]

Please try the beta release: [ https://github.com/dwcaress/MB-System/releases/tag/5.7.9beta29 | https://github.com/dwcaress/MB-System/releases/tag/5.7.9beta29 ]

I am able to build this on Ubuntu 20.04.

Cheers, Dave

David W. Caress Principal Engineer Seafloor Mapping Lab

Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, CA 95039

@.*** [ http://www.mbari.org/~caress/ | http://www.mbari.org/~caress/ ]

Phone: 831-775-1775

— Reply to this email directly, [ https://github.com/dwcaress/MB-System/issues/1262#issuecomment-1126167006 | view it on GitHub ] , or [ https://github.com/notifications/unsubscribe-auth/AAS327FCOTI3LZ6NBYZAXVLVJZW4VANCNFSM5MT7GKNQ | unsubscribe ] . You are receiving this because you are subscribed to this thread. Message ID: < [ @. | @. ] >

BQ_END

tomoreilly commented 2 years ago

Hi Kent,

Do you have a set of CMakeFileLists.txt files in some branch that work under MacOS? I'm thinking that the cmake structure I'm using might be properly meshing with what you are using for trn stuff. In particular MB-System/CMakeFileLists.txt is expecting to find src/mbtrn/CMakeFileLists.txt, but that file doesn't exist in master, feature-newgui, or trndev branches.

Thanks Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) @.*** (email) http://www.mbari.org (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "Kent Headley" @.> To: "Tom O'Reilly" @.> Cc: "dwcaress" @.***> Sent: Friday, May 13, 2022 11:14:15 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

I haven't tried a cmake build on ubuntu. Not too long ago, I merge changes from feature/new-gui into trndev, and may have changed a thing or two in the cmake TRN build that seemed broken.

You could try building the trndev branch as a diagnostic exercise.

Kent

On May 13, 2022, at 10:48 AM, Tom O'Reilly < [ @. | @. ] > wrote:

Using cmake

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) [ @. | @. ] (email) [ http://www.mbari.org/ | http://www.mbari.org ] (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "Kent Headley" < [ @. | @. ] > To: "Tom O'Reilly" < [ @. | @. ] > Cc: "dwcaress" < [ @. | @. ] > Sent: Friday, May 13, 2022 10:45:26 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

Ok, are you using cmake or autotools to build?

BQ_BEGIN

On May 13, 2022, at 10:44 AM, Tom O'Reilly < [ @. | @. ] > wrote:

Thanks Kent. I'm working in the feature-newgui branch which I haven't pulled recently, so don't expect to see the recent changes you refer to.

Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) [ @. | @. ] (email) [ http://www.mbari.org/ | http://www.mbari.org ] (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "Kent Headley" < [ @. | @. ] > To: "Tom O'Reilly" < [ @. | @. ] > Cc: "dwcaress" < [ @. | @. ] > Sent: Friday, May 13, 2022 10:40:21 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

libr7kr and libmframe are in MB-SYSTEM/src/mbtrn and src/mbtrnframe, respectively. They are related to TRN.

Not sure if it's related, but Dave just committed some build system changes to a beta release that updated some build paths for compatibility with OSX Monterey.

Are you working from a very recent (<24h) tree?

kent

BQ_BEGIN

On May 13, 2022, at 10:35 AM, Tom O'Reilly < [ @. | @. ] > wrote:

Hi guys,

For some reason I can no longer find libr7kr or libmframe on my ubuntu system, nor do I see any obvious source files for them. Where do those libraries come from?

Thanks Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) [ @. | @. ] (email) [ http://www.mbari.org/ | http://www.mbari.org ] (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "David Caress" < [ @. | @. ] > To: "dwcaress" < [ @. | @. ] > Cc: "Subscribed" < [ @. | @. ] > Sent: Friday, May 13, 2022 8:16:26 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

[POSSIBLE IMPERSONATION: This message is using the name of an MBARI account holder and has originated from outside of the organization. Please review the content and sender information carefully.]

Please try the beta release: [ https://github.com/dwcaress/MB-System/releases/tag/5.7.9beta29 | https://github.com/dwcaress/MB-System/releases/tag/5.7.9beta29 ]

I am able to build this on Ubuntu 20.04.

Cheers, Dave

David W. Caress Principal Engineer Seafloor Mapping Lab

Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, CA 95039

@.*** [ http://www.mbari.org/~caress/ | http://www.mbari.org/~caress/ ]

Phone: 831-775-1775

— Reply to this email directly, [ https://github.com/dwcaress/MB-System/issues/1262#issuecomment-1126167006 | view it on GitHub ] , or [ https://github.com/notifications/unsubscribe-auth/AAS327FCOTI3LZ6NBYZAXVLVJZW4VANCNFSM5MT7GKNQ | unsubscribe ] . You are receiving this because you are subscribed to this thread. Message ID: < [ @. | @. ] >

BQ_END

tomoreilly commented 2 years ago

When I say " a set of CMakeFileLists.txt files in some branch that work under MacOS", I mean CMakeFileLists.txt for the trn software.

Thanks Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) @.*** (email) http://www.mbari.org (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "Tom O'Reilly" @.> To: "Kent Headley" @.> Cc: "dwcaress" @.***> Sent: Friday, May 13, 2022 11:48:12 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

Hi Kent,

Do you have a set of CMakeFileLists.txt files in some branch that work under MacOS? I'm thinking that the cmake structure I'm using might be properly meshing with what you are using for trn stuff. In particular MB-System/CMakeFileLists.txt is expecting to find src/mbtrn/CMakeFileLists.txt, but that file doesn't exist in master, feature-newgui, or trndev branches.

Thanks Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) @.*** (email) http://www.mbari.org (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "Kent Headley" @.> To: "Tom O'Reilly" @.> Cc: "dwcaress" @.***> Sent: Friday, May 13, 2022 11:14:15 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

I haven't tried a cmake build on ubuntu. Not too long ago, I merge changes from feature/new-gui into trndev, and may have changed a thing or two in the cmake TRN build that seemed broken.

You could try building the trndev branch as a diagnostic exercise.

Kent

On May 13, 2022, at 10:48 AM, Tom O'Reilly < [ @. | @. ] > wrote:

Using cmake

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) [ @. | @. ] (email) [ http://www.mbari.org/ | http://www.mbari.org ] (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "Kent Headley" < [ @. | @. ] > To: "Tom O'Reilly" < [ @. | @. ] > Cc: "dwcaress" < [ @. | @. ] > Sent: Friday, May 13, 2022 10:45:26 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

Ok, are you using cmake or autotools to build?

BQ_BEGIN

On May 13, 2022, at 10:44 AM, Tom O'Reilly < [ @. | @. ] > wrote:

Thanks Kent. I'm working in the feature-newgui branch which I haven't pulled recently, so don't expect to see the recent changes you refer to.

Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) [ @. | @. ] (email) [ http://www.mbari.org/ | http://www.mbari.org ] (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "Kent Headley" < [ @. | @. ] > To: "Tom O'Reilly" < [ @. | @. ] > Cc: "dwcaress" < [ @. | @. ] > Sent: Friday, May 13, 2022 10:40:21 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

libr7kr and libmframe are in MB-SYSTEM/src/mbtrn and src/mbtrnframe, respectively. They are related to TRN.

Not sure if it's related, but Dave just committed some build system changes to a beta release that updated some build paths for compatibility with OSX Monterey.

Are you working from a very recent (<24h) tree?

kent

BQ_BEGIN

On May 13, 2022, at 10:35 AM, Tom O'Reilly < [ @. | @. ] > wrote:

Hi guys,

For some reason I can no longer find libr7kr or libmframe on my ubuntu system, nor do I see any obvious source files for them. Where do those libraries come from?

Thanks Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) [ @. | @. ] (email) [ http://www.mbari.org/ | http://www.mbari.org ] (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "David Caress" < [ @. | @. ] > To: "dwcaress" < [ @. | @. ] > Cc: "Subscribed" < [ @. | @. ] > Sent: Friday, May 13, 2022 8:16:26 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

[POSSIBLE IMPERSONATION: This message is using the name of an MBARI account holder and has originated from outside of the organization. Please review the content and sender information carefully.]

Please try the beta release: [ https://github.com/dwcaress/MB-System/releases/tag/5.7.9beta29 | https://github.com/dwcaress/MB-System/releases/tag/5.7.9beta29 ]

I am able to build this on Ubuntu 20.04.

Cheers, Dave

David W. Caress Principal Engineer Seafloor Mapping Lab

Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, CA 95039

@.*** [ http://www.mbari.org/~caress/ | http://www.mbari.org/~caress/ ]

Phone: 831-775-1775

— Reply to this email directly, [ https://github.com/dwcaress/MB-System/issues/1262#issuecomment-1126167006 | view it on GitHub ] , or [ https://github.com/notifications/unsubscribe-auth/AAS327FCOTI3LZ6NBYZAXVLVJZW4VANCNFSM5MT7GKNQ | unsubscribe ] . You are receiving this because you are subscribed to this thread. Message ID: < [ @. | @. ] >

BQ_END

tomoreilly commented 2 years ago

The cmake configuration for TRN evolved from an immediate need to integrate with Sentry, and it hasn't caught up with the rest of MB-System; sorry about that. The short answer is that no CMakeFileLists.txt exists in trndev branch in TRN directories (mbtrn, mbtrnav, mbtrnframe, mbtrnutils).

There is a CMakeLists.txt in mbtrnav that is used to build TRN for sentry. It requires mframe (in mbtrnframe). Really, it was made so that the libtrnav and mframe repos (mbtrnav and mbtrnframe mirror these repos) can be integrated into Sentry code, which uses cmake.

So the cmake build is not tightly integrated with MB-System, and doesn't include the MB-System-specific libs and apps (mbtrn, mbtrnutils).

If you don't need TRN and it's vexing the build, I think it can be switched out using configure; I thought it's omitted by default, and these flags enable it.

--enable-mbtrn build mbtrn tools --enable-mbtnav build mbtnav tools

but maybe --disable-mbtrn --disable-mbtnav may be used?

epifanio commented 2 years ago

I can't find a way to disable it - I added :

but doesn't seem to solve the issue.

this is my configure:

./configure --disable-mbtools --disable-mbtrn --disable-mbtnav --with-proj-include=/usr/include --prefix=$VIRTUAL_ENV \
                --with-otps-dir='/OTPS'

the same instruction works for ubuntu-20.04

I did not try with CMake (yet)

epifanio commented 2 years ago

@dwcaress

I tried witrh the latest beta:

➜  build git:(main) ✗ ccmake ..                                                                             

➜  build git:(main) ✗ make     
Consolidate compiler generated dependencies of target mbgsf
[  3%] Built target mbgsf
[  4%] Building C object src/mbaux/CMakeFiles/mbaux.dir/mb_cheb.c.o
In file included from /home/epinux/dev/PHD/HBC-browser/docker/MB-System-5.7.9beta35/src/mbio/mb_io.h:27,
                 from /home/epinux/dev/PHD/HBC-browser/docker/MB-System-5.7.9beta35/src/mbaux/mb_aux.h:36,
                 from /home/epinux/dev/PHD/HBC-browser/docker/MB-System-5.7.9beta35/src/mbaux/mb_cheb.c:61:
/home/epinux/dev/PHD/HBC-browser/docker/MB-System-5.7.9beta35/src/mbio/mb_define.h:42:12: fatal error: rpc/rpc.h: No such file or directory
   42 | #  include <rpc/rpc.h>
      |            ^~~~~~~~~~~
compilation terminated.
make[2]: *** [src/mbaux/CMakeFiles/mbaux.dir/build.make:76: src/mbaux/CMakeFiles/mbaux.dir/mb_cheb.c.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:418: src/mbaux/CMakeFiles/mbaux.dir/all] Error 2
make: *** [Makefile:136: all] Error 2

The build issue is with Ubuntu >20 - I am now trying with: 22.04

MB-System-5.7 builds fine on ubuntu 20.04

dwcaress commented 2 years ago

If you have installed libtirpc-dev and libntirpc-dev on Ubuntu 22.04, where are the rpc.h types.h and xdr.h header files installed? If these headers are inside either /usr/include/rpc/ or /usr/include/tirpc/rpc/ then the existing configure script should find them.

epifanio commented 2 years ago

git master builds fine, the version I am trying to build 5.7.5 (I tried up to 5.7.8) doesn't build - it is asking for

Build does not require -DSUN CFLAG
Not WIN32 system
checking for rpc/rpc.h... no
checking for tirpc/rpc/rpc.h... no
checking for rpc/types.h... no
checking for tirpc/rpc/types.h... no
configure: error: Required header <rpc/types.h> not found, check include path and installed development packages

but the files are there, this the output of :

RUN ls /usr/include/tirpc/
RUN ls /usr/include/tirpc/rpc

just before the MB-System 5.7.8 build, which returns the following output:

Step 12/22 : RUN ls /usr/include/tirpc/
 ---> Running in cbc7319085fb
netconfig.h
rpc
rpcsvc
Removing intermediate container cbc7319085fb
 ---> 1c98bb74a347
Step 13/22 : RUN ls /usr/include/tirpc/rpc
 ---> Running in 25b4a819acd2
auth.h
auth_des.h
auth_gss.h
auth_unix.h
clnt.h
clnt_soc.h
clnt_stat.h
des.h
des_crypt.h
key_prot.h
nettype.h
pmap_clnt.h
pmap_prot.h
pmap_rmt.h
raw.h
rpc.h
rpc_com.h
rpc_msg.h
rpcb_clnt.h
rpcb_prot.h
rpcb_prot.x
rpcent.h
rpcsec_gss.h
svc.h
svc_auth.h
svc_auth_gss.h
svc_dg.h
svc_mt.h
svc_soc.h
types.h
xdr.h
Removing intermediate container 25b4a819acd2

The problem (with me) is that I need a specific MB-System Version (5.7.5) as it "seems" to be the latest version compatible with the MB-System-PDAL driver

I do not know what will be easier/useful: 1) fix the MB-System v5.7.5 build on ubuntu 22.04 2) try to install and debug the MB-System PDAL driver using MB-System master

I personally think opton 1 should be easier, but option 2 more useful for the community.

epifanio commented 2 years ago

More debug .. which seems to be related. I decided to give one more try at building MB-System [git: master] - which builds without errors on ubuntu 22.04 and then build PDAL [git: master] enabling the MB.io drivers.

The build ends with the same error given by MB-System v5.7.5/ on ubuntu 22.04 which is the following:

[ 54%] Building CXX object test/unit/CMakeFiles/pdal_point_view_test.dir/PointViewTest.cpp.o
[ 55%] Building CXX object test/unit/CMakeFiles/pdal_pipeline_writer_test.dir/PipelineWriterTest.cpp.o
[ 56%] Building CXX object test/unit/CMakeFiles/pdal_deflate_test.dir/DeflateTest.cpp.o
[ 56%] Building CXX object test/unit/CMakeFiles/pdal_zstd_test.dir/ZstdTest.cpp.o
[ 56%] Building CXX object test/unit/CMakeFiles/pdal_utils_test.dir/UtilsTest.cpp.o
In file included from /opt/pdal/PDAL/plugins/mbio/io/MbReader.hpp:46,
                 from /opt/pdal/PDAL/plugins/mbio/io/MbReader.cpp:35:
/usr/local/include/mb_define.h:42:12: fatal error: rpc/rpc.h: No such file or directory
   42 | #  include <rpc/rpc.h>
      |            ^~~~~~~~~~~
compilation terminated.
make[2]: *** [plugins/mbio/CMakeFiles/pdal_plugin_reader_mbio.dir/build.make:76: plugins/mbio/CMakeFiles/pdal_plugin_reader_mbio.dir/io/MbReader.cpp.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:699: plugins/mbio/CMakeFiles/pdal_plugin_reader_mbio.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 56%] Building CXX object test/unit/CMakeFiles/pdal_eigen_test.dir/__/__/pdal/private/MathUtils.cpp.o
[ 56%] Linking CXX executable ../../bin/pdal_uuid_test
[ 57%] Linking CXX executable ../../bin/pdal_georeference_test
[ 57%] Linking CXX executable ../../bin/pdal_config_test
[ 57%] Linking CXX executable ../../bin/pdal_log_test
[ 58%] Linking CXX executable ../../bin/pdal_support_test
[ 58%] Linking CXX executable ../../bin/pdal_deflate_test
[ 58%] Linking CXX executable ../../bin/pdal_zstd_test

tomoreilly commented 1 year ago

Using cmake

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) @.*** (email) http://www.mbari.org (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "Kent Headley" @.> To: "Tom O'Reilly" @.> Cc: "dwcaress" @.***> Sent: Friday, May 13, 2022 10:45:26 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

Ok, are you using cmake or autotools to build?

On May 13, 2022, at 10:44 AM, Tom O'Reilly < [ @. | @. ] > wrote:

Thanks Kent. I'm working in the feature-newgui branch which I haven't pulled recently, so don't expect to see the recent changes you refer to.

Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) [ @. | @. ] (email) [ http://www.mbari.org/ | http://www.mbari.org ] (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "Kent Headley" < [ @. | @. ] > To: "Tom O'Reilly" < [ @. | @. ] > Cc: "dwcaress" < [ @. | @. ] > Sent: Friday, May 13, 2022 10:40:21 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

libr7kr and libmframe are in MB-SYSTEM/src/mbtrn and src/mbtrnframe, respectively. They are related to TRN.

Not sure if it's related, but Dave just committed some build system changes to a beta release that updated some build paths for compatibility with OSX Monterey.

Are you working from a very recent (<24h) tree?

kent

BQ_BEGIN

On May 13, 2022, at 10:35 AM, Tom O'Reilly < [ @. | @. ] > wrote:

Hi guys,

For some reason I can no longer find libr7kr or libmframe on my ubuntu system, nor do I see any obvious source files for them. Where do those libraries come from?

Thanks Tom

Thomas C. O'Reilly Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, California 95039-9644 831-775-1766 (voice) 831-775-1620 (FAX) [ @. | @. ] (email) [ http://www.mbari.org/ | http://www.mbari.org ] (World-wide Web)

"The machine does not isolate us from the great mysteries of nature, but plunges us more deeply into them."

ANTOINE DE SAINT-EXUPERY "Wind, Sand, and Stars" (1939)

From: "David Caress" < [ @. | @. ] > To: "dwcaress" < [ @. | @. ] > Cc: "Subscribed" < [ @. | @. ] > Sent: Friday, May 13, 2022 8:16:26 AM Subject: Re: [dwcaress/MB-System] configuere error on linux (ubuntu) can't find tirpc/rpc/types.h (Issue #1262)

[POSSIBLE IMPERSONATION: This message is using the name of an MBARI account holder and has originated from outside of the organization. Please review the content and sender information carefully.]

Please try the beta release: [ https://github.com/dwcaress/MB-System/releases/tag/5.7.9beta29 | https://github.com/dwcaress/MB-System/releases/tag/5.7.9beta29 ]

I am able to build this on Ubuntu 20.04.

Cheers, Dave

David W. Caress Principal Engineer Seafloor Mapping Lab

Monterey Bay Aquarium Research Institute 7700 Sandholdt Road Moss Landing, CA 95039

@.*** [ http://www.mbari.org/~caress/ | http://www.mbari.org/~caress/ ]

Phone: 831-775-1775

— Reply to this email directly, [ https://github.com/dwcaress/MB-System/issues/1262#issuecomment-1126167006 | view it on GitHub ] , or [ https://github.com/notifications/unsubscribe-auth/AAS327FCOTI3LZ6NBYZAXVLVJZW4VANCNFSM5MT7GKNQ | unsubscribe ] . You are receiving this because you are subscribed to this thread. Message ID: < [ @. | @. ] >

BQ_END

schwehr commented 1 year ago

xdr support has left most libc implementations. You may have installed the rpc headers, but if you look in the autoconf logs, you will likely find that you need to add just one of shared lib to the list of linked libraries. And make sure that it's finding the matching header files. Having both around and getting some of one and some of another into one build is likely going to lead to rough times.

On Fri, May 13, 2022 at 10:35 AM tomoreilly @.***> wrote:

epifanio commented 1 year ago

@dwcaress - I am still struggling with this :( - My problem is that I am forced to use V5.7.5 on Ubuntu 22.04 - The reason is the need of using the PDAL driver for MB-System - I opened a ticket for it - is could someone look into it.

On those open tickets, I also added a docker environment to replicate the issue, which could probably help to debug "someone with PDAL / MB-System knowledge" @abellgithub <3 ?

I can't switch back to an older Ubuntu, as all the libraries I rely on are for 22.04, which is the Latest and greatest :) MB-System builds just fine. The problem is that the PDAL driver for MB-System fails to initialize with MB-System Version greater than 5.7.5.

I have checked with @hobu from the PDAL dev team, and they confirmed the MBIO driver did not change; there is no error when building them with a newer MB-System version - but they silently fail to initialize.

@dwcaress After building the latest MB-System beta release (on ubuntu 22.04) , the following error appears when building PDAL master against the MB-Sytem beta release (5.7.9) - I believe this is related to the failing in building on Ubuntu 20.04 Is there something I can try to debug it?

[ 59%] Building CXX object test/unit/CMakeFiles/pdal_uuid_test.dir/UuidTest.cpp.o
In file included from /home/jovyan/work/ARA/laz-perf/PDAL/plugins/mbio/io/MbReader.hpp:46,
                 from /home/jovyan/work/ARA/laz-perf/PDAL/plugins/mbio/io/MbReader.cpp:35:
/usr/local/include/mb_define.h:42:12: fatal error: rpc/rpc.h: No such file or directory
   42 | #  include <rpc/rpc.h>
      |            ^~~~~~~~~~~
compilation terminated.
make[2]: *** [plugins/mbio/CMakeFiles/pdal_plugin_reader_mbio.dir/build.make:76: plugins/mbio/CMakeFiles/pdal_plugin_reader_mbio.dir/io/MbReader.cpp.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:748: plugins/mbio/CMakeFiles/pdal_plugin_reader_mbio.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....

dwcaress / MB-System

configuere error on linux (ubuntu) can't find tirpc/rpc/types.h #1262