Speed is going to be a real issue with the in-memory site calling. At present it is going to take ~6 days to process all 100 million sites for Tetrahymena, which isn't really feasible.
I can try and speed up some of what i'm going, but think we will need to replace Bamtools with another BAM processing library to get a real speed up.
Speed is going to be a real issue with the in-memory site calling. At present it is going to take ~6 days to process all 100 million sites for Tetrahymena, which isn't really feasible.
I can try and speed up some of what i'm going, but think we will need to replace Bamtools with another BAM processing library to get a real speed up.