Allow variable ploidy for ancestor/descendant lines

dwinter / accuMUlate

code for calling mutatons from MA lines

MIT License

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Allow variable ploidy for ancestor/descendant lines #5

Closed dwinter closed 7 years ago

dwinter commented 9 years ago

Will require

[x] User specified ploidy variables for anc/desendant lines
[x] Haploid prior on genotypes
[x] `MutationAccumulation Matrix and MAprobability functions need to take variable sized matrices

dwinter commented 9 years ago

OK. At this point we have MutationMatrix object for all possible experimental designs.

We need to work out how to use them. With the current design it might make sense to have different ReadDataVisitor classes for each experimental design, each with a different MutationMatrix set as a member function and each with a different Visit function to calculate the mutation probabilites.

This also accounts for #8 since the MutationMatrices will only have to be set once

dwinter commented 9 years ago

Now working for functions alone, just need to incorporate them into the VariantVisitor in main