Open shofmon88 opened 6 years ago
Hi @shofmon88 ,
Do you have monomorphic or near-monomorphic populations for some loci in your dataset? These can be a problem when you do the resampling for confidence intervals.
I need to think about the best solution to this (will keep this issue open until that's done), but there is a branch with a temporary fix. If you install this using the command below you may be able to get a helpful answer:
devtools::install_github("dwinter/mmod", ref="bs_fix")
I definitely have near-monomorphic populations. I'll give the fix a try. Thanks!
After using remove.packages("mmod") and installing using the above command, I get:
Error: package or namespace load failed for ‘mmod’ in get(Info[i, 1], envir = env): lazy-load database '/Library/Frameworks/R.framework/Versions/3.4/Resources/library/adegenet/R/adegenet.rdb' is corrupt In addition: Warning message: In get(Info[i, 1], envir = env) : internal error -3 in R_decompress1
when I try to do library(mmod)
well... that's something.
I wonder if you need to restart your R session before loading the devtools installed version?
Good call.
This will take several hours to run, I'll come back with results.
Looks like the fix worked, and the result agrees with the other results I've gotten. Thanks.
Glad to hear it, and thanks for reporting this issue as it will force me to get this change into the CRAN version of the package!
Hi @dwinter , I had the same problem as @shofmon88 The branch with the fix worked as well. However, it may be nice to have it in the CRAN version of the package :) Thanks!
Hello. @dwinter. I experienced the same issue described here, and I was wondering if a solution has been found other than installing the fix. Thank you so much!
I am having the same issue. Is this going to be fixed on the CRAN installation?
Thanks for a great package that fills a critical niche!
When bs <- chao_bootstrap(decoris.final, nreps = 1000) is run, I am able to use bs.D <- summarise_bootstrap(bs, D_Jost) without any errors, but when the method is changed to Gst_Hedrick, the following error is generated:
No object is saved during this process.