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dyerlab / gstudio

An R package for the spatial analysis of population genetic data.
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Gstudio Installation Fail #7

Closed zdiazmar closed 5 years ago

zdiazmar commented 5 years ago

Hi there,

I am installing gstudio on a PC in Rstudio v 3.5.1. I have used: nstall.packages( c("RgoogleMaps", "geosphere", "proto", "sampling", "seqinr", "spacetime", "spdep"), dependencies=TRUE )

library(devtools) install_github("dyerlab/popgraph") install_github("dyerlab/gstudio")

However, after the 'install_github("dyerlab/popgraph")', R throws the following error:

Downloading GitHub repo dyerlab/popgraph@master √ checking for file 'C:\Users\zdiazmar\AppData\Local\Temp\RtmpmMjLA1\remotes313c9a54058\dyerlab-popgraph-5cff3f3/DESCRIPTION' ...

Installing package into ‘C:/Users/zdiazmar/Documents/R/win-library/3.5’ (as ‘lib’ is unspecified)

Does anyone have any suggestions?

Thanks!

dyerlab commented 5 years ago

Let me look

On Wed, Apr 3, 2019 at 15:50 zdiazmar notifications@github.com wrote:

Hi there,

I am installing gstudio on a PC in Rstudio v 3.5.1. I have used: nstall.packages( c("RgoogleMaps", "geosphere", "proto", "sampling", "seqinr", "spacetime", "spdep"), dependencies=TRUE )

library(devtools) install_github("dyerlab/popgraph") install_github("dyerlab/gstudio")

However, after the 'install_github("dyerlab/popgraph")', R throws the following error:

Downloading GitHub repo dyerlab/popgraph@master √ checking for file 'C:\Users\zdiazmar\AppData\Local\Temp\RtmpmMjLA1\remotes313c9a54058\dyerlab-popgraph-5cff3f3/DESCRIPTION' ...

  • preparing 'popgraph': (949ms) √ checking DESCRIPTION meta-information ...
  • checking for LF line-endings in source and make files and shell scripts (376ms)
  • checking for empty or unneeded directories
  • looking to see if a 'data/datalist' file should be added
  • building 'popgraph_1.5.1.tar.gz'

Installing package into ‘C:/Users/zdiazmar/Documents/R/win-library/3.5’ (as ‘lib’ is unspecified)

  • installing source package 'popgraph' ... R data inst byte-compile and prepare package for lazy loading Error in context("popgraph_overlay.R") : could not find function "context" Error : unable to load R code in package 'popgraph' ERROR: lazy loading failed for package 'popgraph'
  • removing 'C:/Users/zdiazmar/Documents/R/win-library/3.5/popgraph' In R CMD INSTALL Error in i.p(...) : (converted from warning) installation of package ‘C:/Users/zdiazmar/AppData/Local/Temp/RtmpmMjLA1/file313c2b9f6172/popgraph_1.5.1.tar.gz’ had non-zero exit status In addition: Warning messages: 1: In untar2(tarfile, files, list, exdir) : skipping pax global extended headers 2: In untar2(tarfile, files, list, exdir) : skipping pax global extended headers

Does anyone have any suggestions?

Thanks!

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/dyerlab/gstudio/issues/7, or mute the thread https://github.com/notifications/unsubscribe-auth/ADodzpGh6mxEA0PWUkw36_dx2TuJTjamks5vdL-ggaJpZM4catq1 .

-- Rodney Dyer, PhD

dyerlab commented 5 years ago

Try it now

On Wed, Apr 3, 2019 at 18:45 Rodney Dyer rjdyer@vcu.edu wrote:

Let me look

On Wed, Apr 3, 2019 at 15:50 zdiazmar notifications@github.com wrote:

Hi there,

I am installing gstudio on a PC in Rstudio v 3.5.1. I have used: nstall.packages( c("RgoogleMaps", "geosphere", "proto", "sampling", "seqinr", "spacetime", "spdep"), dependencies=TRUE )

library(devtools) install_github("dyerlab/popgraph") install_github("dyerlab/gstudio")

However, after the 'install_github("dyerlab/popgraph")', R throws the following error:

Downloading GitHub repo dyerlab/popgraph@master √ checking for file 'C:\Users\zdiazmar\AppData\Local\Temp\RtmpmMjLA1\remotes313c9a54058\dyerlab-popgraph-5cff3f3/DESCRIPTION' ...

  • preparing 'popgraph': (949ms) √ checking DESCRIPTION meta-information ...
  • checking for LF line-endings in source and make files and shell scripts (376ms)
  • checking for empty or unneeded directories
  • looking to see if a 'data/datalist' file should be added
  • building 'popgraph_1.5.1.tar.gz'

Installing package into ‘C:/Users/zdiazmar/Documents/R/win-library/3.5’ (as ‘lib’ is unspecified)

  • installing source package 'popgraph' ... R data inst byte-compile and prepare package for lazy loading Error in context("popgraph_overlay.R") : could not find function "context" Error : unable to load R code in package 'popgraph' ERROR: lazy loading failed for package 'popgraph'
  • removing 'C:/Users/zdiazmar/Documents/R/win-library/3.5/popgraph' In R CMD INSTALL Error in i.p(...) : (converted from warning) installation of package ‘C:/Users/zdiazmar/AppData/Local/Temp/RtmpmMjLA1/file313c2b9f6172/popgraph_1.5.1.tar.gz’ had non-zero exit status In addition: Warning messages: 1: In untar2(tarfile, files, list, exdir) : skipping pax global extended headers 2: In untar2(tarfile, files, list, exdir) : skipping pax global extended headers

Does anyone have any suggestions?

Thanks!

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/dyerlab/gstudio/issues/7, or mute the thread https://github.com/notifications/unsubscribe-auth/ADodzpGh6mxEA0PWUkw36_dx2TuJTjamks5vdL-ggaJpZM4catq1 .

-- Rodney Dyer, PhD

-- Rodney Dyer, PhD

zdiazmar commented 5 years ago

I am still getting the same error! Please let me know if you need more information

On Wed, Apr 3, 2019 at 12:50 PM Rodney J. Dyer notifications@github.com wrote:

Try it now

On Wed, Apr 3, 2019 at 18:45 Rodney Dyer rjdyer@vcu.edu wrote:

Let me look

On Wed, Apr 3, 2019 at 15:50 zdiazmar notifications@github.com wrote:

Hi there,

I am installing gstudio on a PC in Rstudio v 3.5.1. I have used: nstall.packages( c("RgoogleMaps", "geosphere", "proto", "sampling", "seqinr", "spacetime", "spdep"), dependencies=TRUE )

library(devtools) install_github("dyerlab/popgraph") install_github("dyerlab/gstudio")

However, after the 'install_github("dyerlab/popgraph")', R throws the following error:

Downloading GitHub repo dyerlab/popgraph@master √ checking for file

'C:\Users\zdiazmar\AppData\Local\Temp\RtmpmMjLA1\remotes313c9a54058\dyerlab-popgraph-5cff3f3/DESCRIPTION' ...

  • preparing 'popgraph': (949ms) √ checking DESCRIPTION meta-information ...
  • checking for LF line-endings in source and make files and shell scripts (376ms)
  • checking for empty or unneeded directories
  • looking to see if a 'data/datalist' file should be added
  • building 'popgraph_1.5.1.tar.gz'

Installing package into ‘C:/Users/zdiazmar/Documents/R/win-library/3.5’ (as ‘lib’ is unspecified)

  • installing source package 'popgraph' ... R data inst byte-compile and prepare package for lazy loading Error in context("popgraph_overlay.R") : could not find function "context" Error : unable to load R code in package 'popgraph' ERROR: lazy loading failed for package 'popgraph'
  • removing 'C:/Users/zdiazmar/Documents/R/win-library/3.5/popgraph' In R CMD INSTALL Error in i.p(...) : (converted from warning) installation of package

‘C:/Users/zdiazmar/AppData/Local/Temp/RtmpmMjLA1/file313c2b9f6172/popgraph_1.5.1.tar.gz’ had non-zero exit status In addition: Warning messages: 1: In untar2(tarfile, files, list, exdir) : skipping pax global extended headers 2: In untar2(tarfile, files, list, exdir) : skipping pax global extended headers

Does anyone have any suggestions?

Thanks!

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/dyerlab/gstudio/issues/7, or mute the thread < https://github.com/notifications/unsubscribe-auth/ADodzpGh6mxEA0PWUkw36_dx2TuJTjamks5vdL-ggaJpZM4catq1

.

-- Rodney Dyer, PhD

-- Rodney Dyer, PhD

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/dyerlab/gstudio/issues/7#issuecomment-479592060, or mute the thread https://github.com/notifications/unsubscribe-auth/ATZwAR1p4dsAodOB8OqiCmEYvQULn8zQks5vdOnRgaJpZM4catq1 .

-- Zoë Diaz-Martin PhD Candidate Tulane University Department of Ecology and Evolutionary Biology

dyerlab commented 5 years ago

Try it again. I just deleted EVERYTHING from within that function.

Rodney

On Wed, Apr 3, 2019 at 8:13 PM zdiazmar notifications@github.com wrote:

I am still getting the same error! Please let me know if you need more information

On Wed, Apr 3, 2019 at 12:50 PM Rodney J. Dyer notifications@github.com wrote:

Try it now

On Wed, Apr 3, 2019 at 18:45 Rodney Dyer rjdyer@vcu.edu wrote:

Let me look

On Wed, Apr 3, 2019 at 15:50 zdiazmar notifications@github.com wrote:

Hi there,

I am installing gstudio on a PC in Rstudio v 3.5.1. I have used: nstall.packages( c("RgoogleMaps", "geosphere", "proto", "sampling", "seqinr", "spacetime", "spdep"), dependencies=TRUE )

library(devtools) install_github("dyerlab/popgraph") install_github("dyerlab/gstudio")

However, after the 'install_github("dyerlab/popgraph")', R throws the following error:

Downloading GitHub repo dyerlab/popgraph@master √ checking for file

'C:\Users\zdiazmar\AppData\Local\Temp\RtmpmMjLA1\remotes313c9a54058\dyerlab-popgraph-5cff3f3/DESCRIPTION'

...

  • preparing 'popgraph': (949ms) √ checking DESCRIPTION meta-information ...
  • checking for LF line-endings in source and make files and shell scripts (376ms)
  • checking for empty or unneeded directories
  • looking to see if a 'data/datalist' file should be added
  • building 'popgraph_1.5.1.tar.gz'

Installing package into ‘C:/Users/zdiazmar/Documents/R/win-library/3.5’ (as ‘lib’ is unspecified)

  • installing source package 'popgraph' ... R data inst byte-compile and prepare package for lazy loading Error in context("popgraph_overlay.R") : could not find function "context" Error : unable to load R code in package 'popgraph' ERROR: lazy loading failed for package 'popgraph'
  • removing 'C:/Users/zdiazmar/Documents/R/win-library/3.5/popgraph' In R CMD INSTALL Error in i.p(...) : (converted from warning) installation of package

‘C:/Users/zdiazmar/AppData/Local/Temp/RtmpmMjLA1/file313c2b9f6172/popgraph_1.5.1.tar.gz’

had non-zero exit status In addition: Warning messages: 1: In untar2(tarfile, files, list, exdir) : skipping pax global extended headers 2: In untar2(tarfile, files, list, exdir) : skipping pax global extended headers

Does anyone have any suggestions?

Thanks!

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/dyerlab/gstudio/issues/7, or mute the thread <

https://github.com/notifications/unsubscribe-auth/ADodzpGh6mxEA0PWUkw36_dx2TuJTjamks5vdL-ggaJpZM4catq1

.

-- Rodney Dyer, PhD

-- Rodney Dyer, PhD

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/dyerlab/gstudio/issues/7#issuecomment-479592060, or mute the thread < https://github.com/notifications/unsubscribe-auth/ATZwAR1p4dsAodOB8OqiCmEYvQULn8zQks5vdOnRgaJpZM4catq1

.

-- Zoë Diaz-Martin PhD Candidate Tulane University Department of Ecology and Evolutionary Biology

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/dyerlab/gstudio/issues/7#issuecomment-479621603, or mute the thread https://github.com/notifications/unsubscribe-auth/ADodzvYqPWwVOUjNbsBgP1lFUcJeEovcks5vdP1BgaJpZM4catq1 .

-- Rodney Dyer, PhD

zdiazmar commented 5 years ago

It looks like I'm still getting the same error message, as follows:

Downloading GitHub repo dyerlab/popgraph@master √ checking for file 'C:\Users\zdiazmar\AppData\Local\Temp\RtmpS05bCE\remotes2ca079345a9e\dyerlab-popgraph-da9a3d5/DESCRIPTION' ...

Installing package into ‘C:/Users/zdiazmar/Documents/R/win-library/3.5’ (as ‘lib’ is unspecified)

If this is too much of a hassle, I think I can find a work around using other packages!

On Wed, Apr 3, 2019 at 3:11 PM Rodney J. Dyer notifications@github.com wrote:

Try it again. I just deleted EVERYTHING from within that function.

Rodney

On Wed, Apr 3, 2019 at 8:13 PM zdiazmar notifications@github.com wrote:

I am still getting the same error! Please let me know if you need more information

On Wed, Apr 3, 2019 at 12:50 PM Rodney J. Dyer <notifications@github.com

wrote:

Try it now

On Wed, Apr 3, 2019 at 18:45 Rodney Dyer rjdyer@vcu.edu wrote:

Let me look

On Wed, Apr 3, 2019 at 15:50 zdiazmar notifications@github.com wrote:

Hi there,

I am installing gstudio on a PC in Rstudio v 3.5.1. I have used: nstall.packages( c("RgoogleMaps", "geosphere", "proto", "sampling", "seqinr", "spacetime", "spdep"), dependencies=TRUE )

library(devtools) install_github("dyerlab/popgraph") install_github("dyerlab/gstudio")

However, after the 'install_github("dyerlab/popgraph")', R throws the following error:

Downloading GitHub repo dyerlab/popgraph@master √ checking for file

'C:\Users\zdiazmar\AppData\Local\Temp\RtmpmMjLA1\remotes313c9a54058\dyerlab-popgraph-5cff3f3/DESCRIPTION'

...

  • preparing 'popgraph': (949ms) √ checking DESCRIPTION meta-information ...
  • checking for LF line-endings in source and make files and shell scripts (376ms)
  • checking for empty or unneeded directories
  • looking to see if a 'data/datalist' file should be added
  • building 'popgraph_1.5.1.tar.gz'

Installing package into ‘C:/Users/zdiazmar/Documents/R/win-library/3.5’ (as ‘lib’ is unspecified)

  • installing source package 'popgraph' ... R data inst byte-compile and prepare package for lazy loading Error in context("popgraph_overlay.R") : could not find function "context" Error : unable to load R code in package 'popgraph' ERROR: lazy loading failed for package 'popgraph'
  • removing 'C:/Users/zdiazmar/Documents/R/win-library/3.5/popgraph' In R CMD INSTALL Error in i.p(...) : (converted from warning) installation of package

‘C:/Users/zdiazmar/AppData/Local/Temp/RtmpmMjLA1/file313c2b9f6172/popgraph_1.5.1.tar.gz’

had non-zero exit status In addition: Warning messages: 1: In untar2(tarfile, files, list, exdir) : skipping pax global extended headers 2: In untar2(tarfile, files, list, exdir) : skipping pax global extended headers

Does anyone have any suggestions?

Thanks!

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/dyerlab/gstudio/issues/7, or mute the thread <

https://github.com/notifications/unsubscribe-auth/ADodzpGh6mxEA0PWUkw36_dx2TuJTjamks5vdL-ggaJpZM4catq1

.

-- Rodney Dyer, PhD

-- Rodney Dyer, PhD

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/dyerlab/gstudio/issues/7#issuecomment-479592060, or mute the thread <

https://github.com/notifications/unsubscribe-auth/ATZwAR1p4dsAodOB8OqiCmEYvQULn8zQks5vdOnRgaJpZM4catq1

.

-- Zoë Diaz-Martin PhD Candidate Tulane University Department of Ecology and Evolutionary Biology

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/dyerlab/gstudio/issues/7#issuecomment-479621603, or mute the thread < https://github.com/notifications/unsubscribe-auth/ADodzvYqPWwVOUjNbsBgP1lFUcJeEovcks5vdP1BgaJpZM4catq1

.

-- Rodney Dyer, PhD

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/dyerlab/gstudio/issues/7#issuecomment-479640579, or mute the thread https://github.com/notifications/unsubscribe-auth/ATZwATT_Y9BYgCUudumd3xywq2yGoFbaks5vdQrUgaJpZM4catq1 .

-- Zoë Diaz-Martin PhD Candidate Tulane University Department of Ecology and Evolutionary Biology

dyerlab commented 5 years ago

Found the problem. Should work now.

R

On Wed, Apr 3, 2019 at 9:44 PM zdiazmar notifications@github.com wrote:

It looks like I'm still getting the same error message, as follows:

Downloading GitHub repo dyerlab/popgraph@master √ checking for file

'C:\Users\zdiazmar\AppData\Local\Temp\RtmpS05bCE\remotes2ca079345a9e\dyerlab-popgraph-da9a3d5/DESCRIPTION' ...

  • preparing 'popgraph': (903ms) √ checking DESCRIPTION meta-information ...
  • checking for LF line-endings in source and make files and shell scripts (335ms)
  • checking for empty or unneeded directories
  • looking to see if a 'data/datalist' file should be added
  • building 'popgraph_1.5.1.tar.gz'

Installing package into ‘C:/Users/zdiazmar/Documents/R/win-library/3.5’ (as ‘lib’ is unspecified)

  • installing source package 'popgraph' ... R data inst byte-compile and prepare package for lazy loading Error in context("popgraph_overlay.R") : could not find function "context" Error : unable to load R code in package 'popgraph' ERROR: lazy loading failed for package 'popgraph'
  • removing 'C:/Users/zdiazmar/Documents/R/win-library/3.5/popgraph' In R CMD INSTALL Error in i.p(...) : (converted from warning) installation of package

‘C:/Users/zdiazmar/AppData/Local/Temp/RtmpS05bCE/file2ca043d264d1/popgraph_1.5.1.tar.gz’ had non-zero exit status In addition: Warning messages: 1: In untar2(tarfile, files, list, exdir) : skipping pax global extended headers 2: In untar2(tarfile, files, list, exdir) : skipping pax global extended headers

If this is too much of a hassle, I think I can find a work around using other packages!

On Wed, Apr 3, 2019 at 3:11 PM Rodney J. Dyer notifications@github.com wrote:

Try it again. I just deleted EVERYTHING from within that function.

Rodney

On Wed, Apr 3, 2019 at 8:13 PM zdiazmar notifications@github.com wrote:

I am still getting the same error! Please let me know if you need more information

On Wed, Apr 3, 2019 at 12:50 PM Rodney J. Dyer < notifications@github.com

wrote:

Try it now

On Wed, Apr 3, 2019 at 18:45 Rodney Dyer rjdyer@vcu.edu wrote:

Let me look

On Wed, Apr 3, 2019 at 15:50 zdiazmar notifications@github.com wrote:

Hi there,

I am installing gstudio on a PC in Rstudio v 3.5.1. I have used: nstall.packages( c("RgoogleMaps", "geosphere", "proto", "sampling", "seqinr", "spacetime", "spdep"), dependencies=TRUE )

library(devtools) install_github("dyerlab/popgraph") install_github("dyerlab/gstudio")

However, after the 'install_github("dyerlab/popgraph")', R throws the following error:

Downloading GitHub repo dyerlab/popgraph@master √ checking for file

'C:\Users\zdiazmar\AppData\Local\Temp\RtmpmMjLA1\remotes313c9a54058\dyerlab-popgraph-5cff3f3/DESCRIPTION'

...

  • preparing 'popgraph': (949ms) √ checking DESCRIPTION meta-information ...
  • checking for LF line-endings in source and make files and shell scripts (376ms)
  • checking for empty or unneeded directories
  • looking to see if a 'data/datalist' file should be added
  • building 'popgraph_1.5.1.tar.gz'

Installing package into ‘C:/Users/zdiazmar/Documents/R/win-library/3.5’ (as ‘lib’ is unspecified)

  • installing source package 'popgraph' ... R data inst byte-compile and prepare package for lazy loading Error in context("popgraph_overlay.R") : could not find function "context" Error : unable to load R code in package 'popgraph' ERROR: lazy loading failed for package 'popgraph'
  • removing 'C:/Users/zdiazmar/Documents/R/win-library/3.5/popgraph' In R CMD INSTALL Error in i.p(...) : (converted from warning) installation of package

‘C:/Users/zdiazmar/AppData/Local/Temp/RtmpmMjLA1/file313c2b9f6172/popgraph_1.5.1.tar.gz’

had non-zero exit status In addition: Warning messages: 1: In untar2(tarfile, files, list, exdir) : skipping pax global extended headers 2: In untar2(tarfile, files, list, exdir) : skipping pax global extended headers

Does anyone have any suggestions?

Thanks!

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/dyerlab/gstudio/issues/7, or mute the thread <

https://github.com/notifications/unsubscribe-auth/ADodzpGh6mxEA0PWUkw36_dx2TuJTjamks5vdL-ggaJpZM4catq1

.

-- Rodney Dyer, PhD

-- Rodney Dyer, PhD

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <https://github.com/dyerlab/gstudio/issues/7#issuecomment-479592060 , or mute the thread <

https://github.com/notifications/unsubscribe-auth/ATZwAR1p4dsAodOB8OqiCmEYvQULn8zQks5vdOnRgaJpZM4catq1

.

-- Zoë Diaz-Martin PhD Candidate Tulane University Department of Ecology and Evolutionary Biology

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/dyerlab/gstudio/issues/7#issuecomment-479621603, or mute the thread <

https://github.com/notifications/unsubscribe-auth/ADodzvYqPWwVOUjNbsBgP1lFUcJeEovcks5vdP1BgaJpZM4catq1

.

-- Rodney Dyer, PhD

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/dyerlab/gstudio/issues/7#issuecomment-479640579, or mute the thread < https://github.com/notifications/unsubscribe-auth/ATZwATT_Y9BYgCUudumd3xywq2yGoFbaks5vdQrUgaJpZM4catq1

.

-- Zoë Diaz-Martin PhD Candidate Tulane University Department of Ecology and Evolutionary Biology

— You are receiving this because you commented.

Reply to this email directly, view it on GitHub https://github.com/dyerlab/gstudio/issues/7#issuecomment-479651376, or mute the thread https://github.com/notifications/unsubscribe-auth/ADodzvdGbZcXx8CghKkf2cM1F34WSdNhks5vdRKRgaJpZM4catq1 .

-- Rodney Dyer, PhD

zdiazmar commented 5 years ago

Woo, it worked - thanks!!

On Thu, Apr 4, 2019 at 3:50 AM Rodney J. Dyer notifications@github.com wrote:

Found the problem. Should work now.

R

On Wed, Apr 3, 2019 at 9:44 PM zdiazmar notifications@github.com wrote:

It looks like I'm still getting the same error message, as follows:

Downloading GitHub repo dyerlab/popgraph@master √ checking for file

'C:\Users\zdiazmar\AppData\Local\Temp\RtmpS05bCE\remotes2ca079345a9e\dyerlab-popgraph-da9a3d5/DESCRIPTION' ...

  • preparing 'popgraph': (903ms) √ checking DESCRIPTION meta-information ...
  • checking for LF line-endings in source and make files and shell scripts (335ms)
  • checking for empty or unneeded directories
  • looking to see if a 'data/datalist' file should be added
  • building 'popgraph_1.5.1.tar.gz'

Installing package into ‘C:/Users/zdiazmar/Documents/R/win-library/3.5’ (as ‘lib’ is unspecified)

  • installing source package 'popgraph' ... R data inst byte-compile and prepare package for lazy loading Error in context("popgraph_overlay.R") : could not find function "context" Error : unable to load R code in package 'popgraph' ERROR: lazy loading failed for package 'popgraph'
  • removing 'C:/Users/zdiazmar/Documents/R/win-library/3.5/popgraph' In R CMD INSTALL Error in i.p(...) : (converted from warning) installation of package

‘C:/Users/zdiazmar/AppData/Local/Temp/RtmpS05bCE/file2ca043d264d1/popgraph_1.5.1.tar.gz’ had non-zero exit status In addition: Warning messages: 1: In untar2(tarfile, files, list, exdir) : skipping pax global extended headers 2: In untar2(tarfile, files, list, exdir) : skipping pax global extended headers

If this is too much of a hassle, I think I can find a work around using other packages!

On Wed, Apr 3, 2019 at 3:11 PM Rodney J. Dyer notifications@github.com wrote:

Try it again. I just deleted EVERYTHING from within that function.

Rodney

On Wed, Apr 3, 2019 at 8:13 PM zdiazmar notifications@github.com wrote:

I am still getting the same error! Please let me know if you need more information

On Wed, Apr 3, 2019 at 12:50 PM Rodney J. Dyer < notifications@github.com

wrote:

Try it now

On Wed, Apr 3, 2019 at 18:45 Rodney Dyer rjdyer@vcu.edu wrote:

Let me look

On Wed, Apr 3, 2019 at 15:50 zdiazmar notifications@github.com wrote:

Hi there,

I am installing gstudio on a PC in Rstudio v 3.5.1. I have used: nstall.packages( c("RgoogleMaps", "geosphere", "proto", "sampling", "seqinr", "spacetime", "spdep"), dependencies=TRUE )

library(devtools) install_github("dyerlab/popgraph") install_github("dyerlab/gstudio")

However, after the 'install_github("dyerlab/popgraph")', R throws the following error:

Downloading GitHub repo dyerlab/popgraph@master √ checking for file

'C:\Users\zdiazmar\AppData\Local\Temp\RtmpmMjLA1\remotes313c9a54058\dyerlab-popgraph-5cff3f3/DESCRIPTION'

...

  • preparing 'popgraph': (949ms) √ checking DESCRIPTION meta-information ...
  • checking for LF line-endings in source and make files and shell scripts (376ms)
  • checking for empty or unneeded directories
  • looking to see if a 'data/datalist' file should be added
  • building 'popgraph_1.5.1.tar.gz'

Installing package into ‘C:/Users/zdiazmar/Documents/R/win-library/3.5’ (as ‘lib’ is unspecified)

  • installing source package 'popgraph' ... R data inst byte-compile and prepare package for lazy loading Error in context("popgraph_overlay.R") : could not find function "context" Error : unable to load R code in package 'popgraph' ERROR: lazy loading failed for package 'popgraph'
  • removing 'C:/Users/zdiazmar/Documents/R/win-library/3.5/popgraph' In R CMD INSTALL Error in i.p(...) : (converted from warning) installation of package

‘C:/Users/zdiazmar/AppData/Local/Temp/RtmpmMjLA1/file313c2b9f6172/popgraph_1.5.1.tar.gz’

had non-zero exit status In addition: Warning messages: 1: In untar2(tarfile, files, list, exdir) : skipping pax global extended headers 2: In untar2(tarfile, files, list, exdir) : skipping pax global extended headers

Does anyone have any suggestions?

Thanks!

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