no top_genes in outputs

dylkot / cNMF

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

MIT License

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no top_genes in outputs #81

Closed DiegoSafian closed 1 month ago

DiegoSafian commented 2 months ago

Hi,

I am running version 4.1 in command line and I am getting all the output, except for top_genes. Do you know if there is something I can do to obtain it?? cnmf.txt

Kind regards, Diego

dylkot commented 1 month ago

Hi Diego, currently top_genes is created on the fly with the cnmf_obj.load_results() function in the Python environment and isn't created in any of the functions run from the command line. I'll consider adding something like the top_genes output to the consensus step in the future.