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dynverse / anndata

Annotated multivariate observation data in R
https://anndata.dynverse.org
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Zarr support #9

Closed schienstockd closed 1 week ago

schienstockd commented 3 years ago

Hello.

Out of interest, can you open and write zarr files with reticulate? We have a an R/Shiny image analysis application and would like to store the data as zarr. We currently use scanpy and h5 which is working. I found this github page that attempted to implement zarr for R: https://github.com/gdkrmr/zarr-R

I'm just curious if that could "just" work with reticulate or if there is a significant technical barrier?

Thanks!

Artur-man commented 4 months ago

I see bindings here that call read_zarr and write_zarr methods from anndata(py), but is there a certain reason that these were commented out ?

rcannood commented 1 week ago

Fixed by #33 ! Will be released soon. Thanks for the reminder!