updated run and def files for parameter selection with pcreode

dynverse / dynmethods

A collection of 50+ trajectory inference methods within a common interface 📥📤

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Closed herrinca closed 6 years ago

rcannood commented 6 years ago

Hey Chuck,

Thanks for your input! I made two changes:

Fixed typo (9c4d63ed9d77997c572e722d1c29dbb6936b7df1)
Added back noise parameter as run.py script relies on it (a4dd11922bbed2721445b0733ea1af1ec3804401)

Is this okay for you?

Robrecht

herrinca commented 6 years ago

Sorry, looks like I missed the noise parameter in the analysis call, instead of

analysis = pcreode.Analysis( file_path = "/ti/workspace/.", graph_id = gid, data = pca_reduced_data, density = density, noise = params["noise"] )

it should be

analysis = pcreode.Analysis( file_path = "/ti/workspace/.", graph_id = gid, data = pca_reduced_data, density = density, noise = noise )

That should get rid of the need for a noise parameter.