search

dynverse / dynmethods

A collection of 50+ trajectory inference methods within a common interface 📥📤
https://dynverse.org
Other
118 stars 26 forks source link

Unavailable Singularity Containers #148

Closed KrisDavie closed 5 years ago

KrisDavie commented 5 years ago

It seems like some of the ti singularity containers are unavailable from Singularity Hub because of build issues.

The containers are as follows:

dynverse/ti_celltree_gibbs dynverse/ti_celltree_maptpx dynverse/ti_celltree_vem dynverse/ti_fateid dynverse/ti_monocle_ica dynverse/ti_monocle_ddrtree dynverse/ti_projected_monocle dynverse/ti_projected_tscan dynverse/ti_raceid_stemid dynverse/ti_sincell dynverse/ti_slicer dynverse/ti_tscan dynverse/ti_waterfall dynverse/ti_paga

Cheers, Kris

rcannood commented 5 years ago

Thanks Kris! I'm taking a look at it.

rcannood commented 5 years ago

I performed manual build triggers on each of the containers, they should be working now. Can you confirm this?

KrisDavie commented 5 years ago

Seems like most of them are present now, with three exceptions.

ti_paga is still not there (wasn't before either)

ti_slingshot and ti_projected_slingshot are not there now (but were before)

Cheers

rcannood commented 5 years ago

Paga is also fixed now :)

For some reason, the singularity build of slingshot is failing whereas docker is working fine: https://travis-ci.org/dynverse/ti_slingshot/builds/479990234

I'll keep you up to date

On Wed, Jan 16, 2019 at 10:16 AM Kris Davie notifications@github.com wrote:

Seems like most of them are present now, with three exceptions.

ti_paga is still not there (wasn't before either)

ti_slingshot and ti_projected_slingshot are not there now (but were before)

Cheers

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/dynverse/dynmethods/issues/148#issuecomment-454707075, or mute the thread https://github.com/notifications/unsubscribe-auth/AAhyqrYS3-nWpVmWYHU9ERnqTZ6O1O0hks5vDu3XgaJpZM4aBSAZ .

rcannood commented 5 years ago

The Slingshot and Projected Slingshot Singularity containers have also finished building :) Can you confirm everything is working now?

Side note, @zouter is working on updating babelwhale to Singularity 3.0. With it, at some point, we will probably switch from singularity hub (which seems on their way to being deprecated) to the Sylabs Singularity Library.

zouter commented 5 years ago

It works for me, :+1: @rcannood !

zouter commented 5 years ago

This is fixed now I think... And will probably no longer be an issue once we start to depend on singularity 3!