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Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
https://dynverse.github.io/dyno
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Fail to run infer_trajectory(dataset, method()) on MAC #114

Open subkhankul opened 2 years ago

subkhankul commented 2 years ago

Hello,

I was happy to use dynverse on Mac with R3.6.0. in R-studio with Docker. After installation the latest version for Mac (4.1) the function infer_trajectory(dataset, method()) always requires Singularity:

model <- infer_trajectory(dataset, ti_scorpius()) Running singularity exec 'docker://dynverse/ti_scorpius:v1.0.0.01' echo hi Error in rethrow_call(c_processx_exec, command, c(command, args), pty, : cannot start processx process 'singularity' (system error 2, No such file or directory) @unix/processx.c:610 (processx_exec) Type .Last.error.trace to see where the error occurred

I re-install all programs including Docker, still no luck. I also have problems to install Singularity for Mac. Could you help, please?

Thank you in advance

rcannood commented 2 years ago

Could you try setting docker to the default runner?

library(babelwhale)
config <- create_docker_config()
set_default_config(config)
subkhankul commented 2 years ago

Thank you very much for your help, I am still having an error. "infer_trajectory(dataset, ti_method())" starts working, but doesn't make an object.

[cid:d37d61be-927e-4b0c-bd10-4125185d3048] [cid:b12518dd-8c03-4bfd-b249-0bad4c33812b]

Thank you,

Tatiana

Could you try setting docker to the default runner?

library(babelwhale) config <- create_docker_config() set_default_config(config)

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