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dynverse / dyno

Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
https://dynverse.github.io/dyno
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weird plot with paga trajectory #116

Open y-gao opened 2 years ago

y-gao commented 2 years ago

Hi,

I am using paga to infer trajectory with 10000 cells and 3000 genes. I have prior information of about 120 clusters. But when I plot it, the trajectory is a messy. Can you let me know the reason for this? eg.pdf