How to deal with the batch effect in dyno?

dynverse / dyno

Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕

https://dynverse.github.io/dyno

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How to deal with the batch effect in dyno? #117

Open Dragonlongzhilin opened 2 years ago

Dragonlongzhilin commented 2 years ago

Nice tool! The dyno package directly input the count or normalised count, which is not correct the batch effect. How does dyno handle this batch effect problem？ If I corrected the batch effect by harmony, What format of data should I enter？