search

dynverse / dyno

Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
https://dynverse.github.io/dyno
Other
163 stars 32 forks source link

Error in "infer_trajectory" #121

Open JarvanDi opened 2 years ago

JarvanDi commented 2 years ago

Hello，

I encountered an error when running infer_trajectoryIt's running on a linux shared server without root access.

data("fibroblast_reprogramming_treutlein")
dataset <- wrap_expression(
  counts = fibroblast_reprogramming_treutlein$counts,
  expression = fibroblast_reprogramming_treutlein$expression
)
model <- infer_trajectory(dataset, "slingshot")

……
……
509c796290f5: Verifying Checksum
509c796290f5: Download complete
509c796290f5: Pull complete
fc7b41c3606c: Pull complete
a0885e753793: Pull complete
Digest: sha256:04c6bf68bb7eea865175b148d3d879f5b6f4932c20093c0a560ffa5e729ebd18
Status: Downloaded newer image for dynverse/ti_slingshot:v1.0.3
docker.io/dynverse/ti_slingshot:v1.0.3
Error in file(con, "r") : cannot open the connection
In addition: Warning message:
In file(con, "r") :
  cannot open file '/tmp/Rtmp4N0Cff/file253dec310c51b8//tmpfile': No such file or directory

Could you help, please? Thank you in advance